AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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carolin31
March 18, 2021 01:38PM
Sorry, I actually have a follow up question!
When I run my script I get a fatal error: Can't open dataset errts.P1002_REML+org

here is my script :

afni_proc.py -subj_id ${subj}\
-script proc.py_scripts3/proc_${subj}.sh\
-out_dir ${top_dir}${subj}/${subj}.3dDeconvolve_reml\
-dsets ${func_dir}pb04.P1002.scale_masked_Despiked_wds.nii.gz\
-blocks regress -regress_reml_exec -regress_opts_reml -Rerrts denoised -regress_motion_file /tmp/yassamri2/Tsukuba/hierarchical/BOLD_variability/data/P1/G1/P1002/P1002.preprocessedtest/dfile_rall.1D -regress_apply_mot_types demean deriv -regress_extra_ortvec ${stim_times_dir}cwm.1D ${stim_times_dir}ccsf.1D -regress_extra_ortvec_labels cwm ccsf

Looks like the dataset errts.P1002_REML+org is not created because I use the option -Rerrts denoised? What is the default errts output when using real? Is errts.P1002_REML+org by default Rerrts?
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Subject Author Posted

using -Rerrts output from 3dremlfit for resting state

carolin31 March 10, 2021 07:13PM

Re: using -Rerrts output from 3dremlfit for resting state

RWCox March 11, 2021 01:53PM

Re: using -Rerrts output from 3dremlfit for resting state

carolin31 March 18, 2021 12:57AM

Re: using -Rerrts output from 3dremlfit for resting state

carolin31 March 18, 2021 01:38PM