hi!
I'd like to use the @auto_tlrc function to standardize my anatomical image to the Schaefer 2018 atlas.
First off, I align the epi to the anatomical image:
align_epi_anat.py -anat "$sub".struc+orig -epi "$sub".image+orig -epi_base 10
and then use @auto_tlrc:
@auto_tlrc -no_ss -base $directory/Schaefer2018_400Parcels_7Networks_order_FSLMNI152_2mm.+tlrc -input $sub.struc_al+orig
As showed in the attached screenshot, I'm having issues with @auto_tlrc output. I normally use '-base TT_N27+tlrc' and never had issues. I'm probably missing some steps here on how to make that atlas usable by afni.
I'd appreciate any help that points to documentation or any help solving this issue.
thanks much,
ns
