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June 10, 2021 07:03AM
Hi all,

a quick question. When using the "WhereAmI" button in the clusterize report window, I get the following warning messages in the terminal:

** Warning: Atlas CA_N27_PM could not be loaded.
** Warning: Atlas CA_PM_18_MNIA could not be loaded.
** Warning: Atlas DKD_Desai_PM could not be loaded.
** Warning: Atlas DD_Desai_PM could not be loaded.
** Warning: Atlas FS_Desai_PM could not be loaded.

I have actually re-downloaded the atlases tarball from:
[afni.nimh.nih.gov]

and placed it in my ~/abin directory, but the warning remains because the corresponding atlases are still missing, as shown by "whereami -show_atlases":

++ ----- Atlas list: -------
++ Name Space Dataset Description
++ __________________________________________________________
++ MNI_Glasser_HCP_v1.0 MNI /home/giuseppep/abin//MNI_Glasser_HCP_v1.0.nii.gz Glasser HCP 2016 surface-based parcellation
++ Brainnetome_1.0 MNI /home/giuseppep/abin//BN_Atlas_246_1mm.nii.gz Brainnetome MPM
++ CA_MPM_22_MNI MNI /home/giuseppep/abin//MNI_caez_mpm_22+tlrc Eickhoff-Zilles MPM atlas
++ CA_MPM_22_TT TT_N27 /home/giuseppep/abin//TT_caez_mpm_22+tlrc Eickhoff-Zilles MPM atlas 2.2 - Talairach space
++ CA_N27_ML TT_N27 /home/giuseppep/abin//TT_caez_ml_18+tlrc Macro Labels (N27)
++ CA_N27_MPM TT_N27 /home/giuseppep/abin//TT_caez_mpm_18+tlrc Cytoarch. Max. Prob. Maps
++ CA_N27_PM TT_N27 TT_caez_pmaps_18+tlrc Cytoarch. Probabilistic Maps 1.8
++ CA_N27_GW TT_N27 /home/giuseppep/abin//TT_caez_gw_18+tlrc Cytoarch. Prob. Maps for gray/white matter 1.8
++ CA_N27_LR TT_N27 /home/giuseppep/abin//TT_caez_lr_18+tlrc Left/Right (N27) 1.8
++ CA_ML_18_MNI MNI /home/giuseppep/abin//MNI_caez_ml_18+tlrc Macro Labels (N27-MNI)
++ CA_MPM_18_MNI MNI /home/giuseppep/abin//MNI_caez_mpm_18+tlrc Cytoarch. Max. Prob. Maps (MNI)
++ CA_LR_18_MNI MNI /home/giuseppep/abin//MNI_caez_lr_18+tlrc Left/Right (N27-MNI)
++ CA_ML_18_MNIA MNI_ANAT /home/giuseppep/abin//MNIa_caez_ml_18+tlrc Macro Labels (N27)
++ CA_MPM_18_MNIA MNI_ANAT /home/giuseppep/abin//MNIa_caez_mpm_18+tlrc Cytoarch. Max. Prob. Maps
++ CA_PM_18_MNIA MNI_ANAT MNIa_caez_pmaps_18+tlrc Cytoarch. Probabilistic Maps
++ CA_GW_18_MNIA MNI_ANAT /home/giuseppep/abin//MNIa_caez_gw_18+tlrc Cytoarch. Prob. Maps for gray/white matter
++ CA_LR_18_MNIA MNI_ANAT /home/giuseppep/abin//MNIa_caez_lr_18+tlrc Left/Right (N27)
++ DKD_Desai_PM TT_N27 TT_desai_dkpmaps+tlrc Probability maps of 35 cortical areas (gyri)
++ DD_Desai_PM TT_N27 TT_desai_ddpmaps+tlrc Probability maps of 75 cortical areas
++ FS_Desai_PM TT_N27 TT_desai_fspmaps+tlrc 40 subcortical areas
++ DD_Desai_MPM TT_N27 /home/giuseppep/abin//TT_desai_dd_mpm+tlrc Maximum probability maps of Desai DD and FS maps
++ DKD_Desai_MPM TT_N27 /home/giuseppep/abin//TT_desai_dk_mpm+tlrc Maximum probability maps of Desai DKD and FS maps
++ MNI_VmPFC MNI /home/giuseppep/abin//MNI_VmPFC+tlrc Ventromedial Prefrontal Cortex
++ TT_Daemon TLRC /home/giuseppep/abin//TTatlas+tlrc Talairach-Tournoux Atlas
++ Haskins_Pediatric_Nonline HaskinsPeds /home/giuseppep/abin//HaskinsPeds_NL_atlas1.0+tlrc.HEAD Version 1.0

My question is why are those atlases missing from the distribution? Is it because they are obsolete/superseded and somewhat the "whereami" function has not been notified?

thanks in advance for any comment/advice!
giuseppe
Subject Author Posted

Missing atlases in whereami

gpagnon June 10, 2021 07:03AM

Re: Missing atlases in whereami

Daniel Glen June 13, 2021 12:25PM

Re: Missing atlases in whereami

gpagnon June 16, 2021 05:21AM

Re: Missing atlases in whereami

wppfighting July 20, 2021 04:49AM



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