AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 12, 2021 08:43AM
Hi, Yasir-

Ah, I see now-- these 2 options lead to the anat being segmented with 3dSeg, which creates known tissue-class names (WM, CSF, etc.), and then those masks are eroded (again with known labels applied: WMe, CSFe, etc.):
-mask_segment_anat yes                                    \
        -mask_segment_erode yes                                   \

What is the actual error that you are getting?

And what specifically did you do to get your ventricle mask? Does its grid match the resampled volreg dataset?

--pt
Subject Author Posted

New preprocessing script based on Example 11b of afni_proc.py

duodenum July 09, 2021 01:04PM

Re: New preprocessing script based on Example 11b of afni_proc.py

duodenum July 09, 2021 04:43PM

Re: New preprocessing script based on Example 11b of afni_proc.py

ptaylor July 09, 2021 06:30PM

Re: New preprocessing script based on Example 11b of afni_proc.py

duodenum July 10, 2021 01:46AM

Re: New preprocessing script based on Example 11b of afni_proc.py

ptaylor July 12, 2021 08:43AM

Re: New preprocessing script based on Example 11b of afni_proc.py

duodenum July 13, 2021 12:20AM

Re: New preprocessing script based on Example 11b of afni_proc.py

duodenum July 15, 2021 04:00PM

Re: New preprocessing script based on Example 11b of afni_proc.py

ptaylor July 26, 2021 04:52PM

Re: New preprocessing script based on Example 11b of afni_proc.py

duodenum August 05, 2021 03:46AM