Jiaxu,
My understanding is that motion occurs at the TR level, and thus is handled in the subject-level, not group-level, analysis.
> I saw that there are numbers for "average motion (per TR)" and "average censored motion", can I record one of the
> numbers and then use it as a covariate in my later steps?
If you believe that differential head motion plays a role at the group level, you could try to use those indices as covariates at the group level and see how it pans out.
Gang