Hello,
I would like to incorporate the -big_move function to help align my epi and anat data better, though I am not sure where I should include this option in my script. Any help is appreciated!
Thank you,
Tamara
afni_proc.py -subj_id 1423 -script proc.big_July_2021 -scr_overwrite -blocks \
tshift align tlrc volreg blur mask scale regress -copy_anat \
/imaging/Tamara/Youth/1423/1423.anat+orig -dsets \
/imaging/Tamara/Youth/1423/1423.1+orig.HEAD \
/imaging/Tamara/Youth/1423/1423.2+orig.HEAD \
/imaging/Tamara/Youth/1423/1423.3+orig.HEAD \
/imaging/Tamara/Youth/1423/1423.4+orig.HEAD \
/imaging/Tamara/Youth/1423/1423.5+orig.HEAD \
/imaging/Tamara/Youth/1423/1423.6+orig.HEAD -tcat_remove_first_trs 0 \
-tlrc_base MNI152_T1_2009c+tlrc -tlrc_NL_warp -volreg_align_to \
MIN_OUTLIER -volreg_align_e2a -volreg_tlrc_warp -blur_size 6.0 \
-regress_stim_times /imaging/Tamara/Youth/1423/Dfeel_Bad_NoResp.txt \
/imaging/Tamara/Youth/1423/Dfeel_Bad_Resp.txt \
/imaging/Tamara/Youth/1423/Dfeel_Happy_NoResp.txt \
/imaging/Tamara/Youth/1423/Dfeel_Happy_Resp.txt \
/imaging/Tamara/Youth/1423/Feel_Bad_NoResp.txt \
/imaging/Tamara/Youth/1423/Feel_Bad_Resp.txt \
/imaging/Tamara/Youth/1423/Feel_Happy_NoResp.txt \
/imaging/Tamara/Youth/1423/Feel_Happ_Resp.txt \
/imaging/Tamara/Youth/1423/Nat_neg_NoResp.txt \
/imaging/Tamara/Youth/1423/Nat_neg_Resp.txt \
/imaging/Tamara/Youth/1423/Nat_post_NoResp.txt \
/imaging/Tamara/Youth/1423/Nat_post_Resp.txt \
/imaging/Tamara/Youth/1423/Rating.txt \
/imaging/Tamara/Youth/1423/new.Instruct.txt -regress_stim_labels \
Dfeel_Bad_NoResp Dfeel_Bad_Resp Dfeel_Happy_NoResp Dfeel_Happy_Resp \
Feel_Bad_NoResp Feel_Bad_Resp Feel_Happy_NoResp Feel_Happy_Resp \
Nat_neg_NoResp Nat_neg_Resp Nat_post_NoResp Nat_post_Resp Rating \
Instruct -regress_basis dmBLOCK -regress_stim_types AM1 \
-regress_censor_motion 1.0 -regress_censor_outliers 0.1 \
-regress_apply_mot_types demean deriv -regress_motion_per_run \
-regress_make_ideal_sum sum_ideal.1D -regress_est_blur_epits \
-regress_est_blur_errts -regress_run_clustsim no -regress_opts_3dD \
-GOFORIT 15 -execute
