AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 30, 2021 03:43AM
Hello

I have a NIFTI file that shows how many participants show tuned responses at each location on the cortical surface (Image 1 attached to the message).
This NIFTI file is in Talairach space (TT_N27_SurfVol in AFNI). I have mapped this file on std.141.TT_N27_both.spec in AFNI (Image 2 attached to the message). I want to map the activity from std.141.TT_N27_both.spec on each of my subjects surfaces (std.141). I have created the surface of each subject in FreeSurfer and convert it to AFNI format using @SUMA_Make_Spec_FS. Would you please tell me which command I should use in AFNI to project activity from one surface to another? Is it SurfToSurf? I read about this command that is used to interpolate data from one surface (S2) to another (S1), assuming the surfaces are quite similar in shape but having different meshes (non-isotopic). But here, the two surfaces have a similar mesh (std.141) and different shapes.
After projecting the activity on the subject’s surface, I want to save it as a NIFTI file to use it as an ROI for the analysis. Would you please tell me what the command is for this conversion?
Actually, what I want is a mask (nii file) of yellow and orange activity. But I want the mask in my subject’s native space.
Attachments:
open | download - 1.png (25.8 KB)
open | download - 2.png (337.4 KB)
Subject Author Posted

Using AFNI to co-register two surfaces Attachments

Alireza July 30, 2021 03:43AM

Re: Using AFNI to co-register two surfaces

ptaylor July 30, 2021 03:45PM

Re: Using AFNI to co-register two surfaces

Alireza August 06, 2021 04:05PM

Re: Using AFNI to co-register two surfaces

ptaylor August 06, 2021 11:26PM

Re: Using AFNI to co-register two surfaces

Alireza August 08, 2021 06:39AM

Re: Using AFNI to co-register two surfaces

Daniel Glen August 08, 2021 10:07AM