AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 05, 2021 12:20PM
Thanks for your help! I'm just picking this back up and am still struggling.

It looks like the Brainnetome fsaverage isn't a full recon-all and is missing orig/orig.mgz. So @SUMA_Make_Spec_FS errors.

***************************************************************
++ Running @SUMA_Make_Spec_FS version: 2.2.4
++ will track 1 extra annot labels

failure: cannot find directory 'orig' or file 'orig.mgz' under .
program failure: exiting...

***************************************************************

I've also tried using SurfToSurf without luck...

SurfToSurf -i ld60 -i 164k/fsaverage.L.inflated.164k.surf.gii -prefix BN_ld60_lh
SurfToSurf -i ld60 -i 164k/fsaverage.R.inflated.164k.surf.gii -prefix BN_ld60_rh


ConvertDset -o_niml -i BN_ld60_lh.1D -prefix BN_ld60_lh
ConvertDset -o_niml -i BN_ld60_rh.1D -prefix BN_ld60_rh
Subject Author Posted

Brainnetome surface atlas 36K (niml.dset)

aclynn11 August 17, 2021 11:49AM

Re: Brainnetome surface atlas 36K (niml.dset)

Daniel Glen August 19, 2021 06:25PM

Re: Brainnetome surface atlas 36K (niml.dset)

aclynn11 August 20, 2021 01:18PM

Re: Brainnetome surface atlas 36K (niml.dset)

Daniel Glen August 21, 2021 12:06AM

Re: Brainnetome surface atlas 36K (niml.dset)

aclynn11 October 05, 2021 12:20PM

Re: Brainnetome surface atlas 36K (niml.dset)

aclynn11 October 05, 2021 12:53PM