AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 23, 2021 12:54PM
Hi AFNI team,

I was runing SurfClust on a flat map to extract cluster information from a dataset and got the following errors:

++ Notice SUMA_Make_Edge_List_eng (SUMA_MiscFunc.c:7799 @11:47:44):
Min/Max number of edge hosting triangles: [1/2]
You have edges that form a border in the surface.

Fatal Signal 11 (SIGSEGV) received
SUMA_Build_Cluster_From_Node_NoRec
SUMA_FindClusters
SurfClust
Bottom of Debug Stack
** AFNI version = AFNI_19.3.18 Compile date = Dec 27 2019
** [[Precompiled binary macos_10.12_local: Dec 27 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/lingyan/.afni.crashlog

This is the command I used:
SurfClust -i ./$hem.full.flat.patch.3d.gii -input /Volumes/bcm-neuro-yau/data/Shoaib/TacFreqEnc/volume_lw/full/${subj}/fs/SUMA/${dname}_${hem}_final.niml.dset 0 \
-rmm -1.000000 -thresh_col 0 -athresh 0.000000 -amm2 30.000000 -sort_area -no_cent -prefix ${subj}_${dname}_${hem}_flat_node -prepend_node_index -out_roidset

I suspect the reason is that I have some clusters on the edge of the map...How can I solve this?

Thank you!
Subject Author Posted

SurfClust error with flat .gii map

swallowwly August 23, 2021 12:54PM

Re: SurfClust error with flat .gii map

ptaylor August 23, 2021 03:51PM

Re: SurfClust error with flat .gii map

swallowwly August 23, 2021 05:57PM

Re: SurfClust error with flat .gii map

ptaylor August 23, 2021 06:19PM

Re: SurfClust error with flat .gii map

swallowwly August 23, 2021 06:58PM

Re: SurfClust error with flat .gii map

ptaylor August 23, 2021 10:11PM

Re: SurfClust error with flat .gii map

swallowwly August 24, 2021 12:52AM

Re: SurfClust error with flat .gii map

ptaylor August 24, 2021 07:40AM

Re: SurfClust error with flat .gii map

ptaylor August 24, 2021 07:42AM

Re: SurfClust error with flat .gii map

swallowwly August 24, 2021 01:27PM

Re: SurfClust error with flat .gii map

swallowwly August 24, 2021 01:55PM

Re: SurfClust error with flat .gii map

ptaylor August 24, 2021 05:51PM

Re: SurfClust error with flat .gii map

swallowwly August 25, 2021 12:32AM