Hello, I am using afni_proc.py to generate a resting preprocessing data script (11b). I have done this in the past, including on the data I am currently examining through the same computer, without issues (even over the past few days). However, today when running the generated script, I run into the error "attributeError: 'NoneType' object has no attribute 'input'" which I have narrowed down to the issue being from align_epi_anat.py. I saw previously one can just add -resample off to the command to circumnavigate the issue. That appears to be working.

My questions are:
(1) Are there any potential issues with the 11b pipeline then if -resample off is set for the align_epi_anat.py step?
(2) Why might this be happening, given this wasn't happening before, and as far as I can tell I am rerunning the same data that I have in the past that had no issue
(3) Is there any other way I might get around this issue other than manually going into each generated proc script and adding -resample off? For example, is there something I can add to afni_proc.py to tell the generated script to do -resample off in the align_epi_anat.py?

Thanks!