AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 28, 2021 06:48PM
Hi Jenna,

In a task analysis, having an incorrect TR (esp by a factor of 2) would be severely destructive, as it would throw off all of the stimulus event times.

But in a resting state analysis, particularly a single-echo one using ROI regressors and no band passing and no retroicor, messing up the TR would not seem too terrible. Perhaps the biggest problem would be using a -polort that is much too high or low if the run duration is twice or half as long as it should be. For a fixed -polort, the entire regression matrix might be TR-independent. It depends on the exact command used.

But in any case, it is best to make sure. As Daniel said, it is hard to know what is correct. Usually, the DICOM files would be considered more reliable. But it begs the question of why they differ from the dataset. DICOM files are often anonymized these days, making them less reliable. And people constructing data packages make mistakes.

Is there any independent source of information on this?

Exactly what are the TRs in question here? And where does the data come from?

- rick
Subject Author Posted

Discrepancy of repetition time between dicom and nifti header

jkblujus September 27, 2021 06:34PM

Re: Discrepancy of repetition time between dicom and nifti header

Daniel Glen September 28, 2021 12:46PM

Re: Discrepancy of repetition time between dicom and nifti header

jkblujus September 28, 2021 05:55PM

Re: Discrepancy of repetition time between dicom and nifti header

rick reynolds September 28, 2021 06:48PM

Re: Discrepancy of repetition time between dicom and nifti header

jkblujus September 29, 2021 12:10PM

Re: Discrepancy of repetition time between dicom and nifti header

rick reynolds September 29, 2021 03:50PM

Re: Discrepancy of repetition time between dicom and nifti header

jkblujus September 29, 2021 04:02PM

Re: Discrepancy of repetition time between dicom and nifti header

Daniel Glen October 04, 2021 01:59PM

Re: Discrepancy of repetition time between dicom and nifti header

Daniel Glen October 05, 2021 10:20AM