AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 08, 2021 01:15PM
Lingyan,

> I have two factors, a and b, each has two levels (a1,a2 and b1,b2). In total I have four conditions (a1b1,a1b2,a2b1,a2b2).
> In each of these conditions, I test 9 different touch frequencies stimulation

Actually your experiment seems to be a 2 x 2 x 9 design. The specifications for the two main effects look fine, but the one for interaction

+a1b1_f1 +a1b1_f2 ... +a1b1_f9 -a1b2_f1 -a1b2_f2 ... -a1b2_f9 +a2b1_f1 +a2b1_f2 ... +a2b1_f9 -a2b2_f1 -a2b2_f2 ... -a2b2_f9

should be

+a1b1_f1 +a1b1_f2 ... +a1b1_f9 -a1b2_f1 -a1b2_f2 ... -a1b2_f9 -a2b1_f1 -a2b1_f2 ... -a2b1_f9 -a2b2_f1 -a2b2_f2 ... -a2b2_f9

> I saw in some other posts that these analyses were done within each frequency, combined with the \ sign

That would be a different inference. For example,

+A \
+B

is intended to set up a null hypothesis

H0: A = 0 and B = 0

and to find out whether there is strong evidence for at least one of the effects.

> I can also add a coefficient in front of each condition like 0.0056.

You could use a different weight (e.g., 0.0556) other than 1, and its impact is only on the interpretability of the effect estimate (beta), not the statistic value. Use 0.0556 if you care about the interpretability of the effect estimate.

Gang
Subject Author Posted

single subject ANOVA using 3dDeconvolve

swallowwly October 07, 2021 01:25PM

Re: single subject ANOVA using 3dDeconvolve

gang October 08, 2021 01:15PM

Re: single subject ANOVA using 3dDeconvolve

swallowwly October 08, 2021 01:41PM

Re: single subject ANOVA using 3dDeconvolve

gang October 08, 2021 03:20PM

Re: single subject ANOVA using 3dDeconvolve

swallowwly October 11, 2021 12:05AM