AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 14, 2021 06:34PM
Just in case you didn't find the modified Schaefer-Yeo atlas,
https://afni.nimh.nih.gov/pub/dist/atlases/SchaeferYeo/

The irregularity of those regions in both surface and volumes led to those modifications we worked on with Thomas Yeo's group.

For DTI analysis, you may want to move the atlas ROI into your native space via the std141*niml.dset files. Those are on a "standard mesh" that can be shared across subjects' surface datasets on the same standard mesh. The way I recommend then is to project those std141*niml.dset files into the volume using @surf_to_vol_spackle. You can dilate the cortical ribbon mask to expand into the white matter or follow Paul's procedure for expanding into the white matter with 3dROImaker, or @ROI_modal_grow.
Subject Author Posted

Schaefer atlas for DTI tractography

witherscp October 14, 2021 06:15PM

Re: Schaefer atlas for DTI tractography

Daniel Glen October 14, 2021 06:34PM

Re: Schaefer atlas for DTI tractography

witherscp October 15, 2021 09:27AM

Re: Schaefer atlas for DTI tractography

Daniel Glen October 15, 2021 12:18PM

Re: Schaefer atlas for DTI tractography

witherscp October 18, 2021 02:05PM

Re: Schaefer atlas for DTI tractography

Daniel Glen October 18, 2021 03:40PM

Re: Schaefer atlas for DTI tractography

witherscp October 19, 2021 11:02AM

Re: Schaefer atlas for DTI tractography

Daniel Glen October 19, 2021 03:54PM