AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 18, 2021 09:13AM
Dear Colleagues,

Hi. I am afni_proc.pying data that has already been afni_proc.pyed. Here are the blocks for afni_proc.py #1:
despike tshift align tlrc volreg mask regress
. For afni_proc.py #2, I am trying to apply
blur mask regress
and, during the regression, apply a whole brain anat mask that I have already created. I was open the redundancy of recreating it with
-mask_apply anat
, but afni_proc.py gave me an error during testing,
** ERROR: cannot apply anat mask
, despite the fact that I gave it
-copy_anat /misc/prog/afni/current.x86_64/TT_N27_SSW.nii.gz
. Therefore, I am back to Square 1. I would like to use
-mask_import LABEL MSET
, but I do not know what LABEL is (subbrick label?), I do not know if I simultaneously still need to use -mask_apply and why I need to use/how I need to use the other regress or mask options listed in the -mask_import option in afni_proc.py -help.

Sincerely,

Dante
Subject Author Posted

afni_proc.py -mask_apply

dante.picchioni October 18, 2021 09:13AM

Re: afni_proc.py -mask_apply

rick reynolds October 19, 2021 08:58AM

Re: afni_proc.py -mask_apply

dante.picchioni October 19, 2021 02:58PM

Re: afni_proc.py -mask_apply

rick reynolds October 19, 2021 04:15PM

Re: afni_proc.py -mask_apply

dante.picchioni October 20, 2021 02:07PM

Re: afni_proc.py -mask_apply

rick reynolds October 20, 2021 05:15PM