AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 09, 2021 02:28PM
Thanks. I just sent the email. See below for the output:

-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 5.4.0-88-generic
version: #99-Ubuntu SMP Thu Sep 23 17:29:00 UTC 2021
distribution: Ubuntu 20.04.1 LTS
number of CPUs: 8
apparent login shell: bash
shell RC file: .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /home/dxc536/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Jan 11 2021
: AFNI_21.0.02 'Titus'
AFNI_version.txt : AFNI_21.0.02, linux_ubuntu_16_64, Jan 11 2021
which python : /home/dxc536/miniconda3/bin/python
python version : 3.9.5
which R : /usr/bin/R
R version : R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
which tcsh : /usr/bin/tcsh

instances of various programs found in PATH:
afni : 1 (/home/dxc536/abin/afni)
R : 1 (/usr/bin/R)
python : 2
/home/dxc536/miniconda3/bin/python3.9
/usr/bin/python3.8
python2 : 1 (/usr/bin/python2.7)
python3 : 2
/home/dxc536/miniconda3/bin/python3.9
/usr/bin/python3.8


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

R RHOME : /usr/lib/R

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** failed to load module PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-------------------------------- env vars --------------------------------
PATH = /home/dxc536/miniconda3/bin:/home/dxc536/miniconda3/condabin:/home/dxc536/ImagingScripts/gauss_scripts:/media/dxc536/UNLOCKER/linux:/home/dxc536/ImagingScripts/pestica_afni_v5.2/slomoco:/home/dxc536/ImagingScripts/pestica_afni_v5.2:/usr/local/fsl/bin:/usr/local/fsl/bin:/home/dxc536/bin:/home/dxc536/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dxc536/abin

PYTHONPATH =
R_LIBS = /home/dxc536/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /home/dxc536/abin

------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 2.0.2ubuntu0.2 (amd64)

have Ubuntu system: Ubuntu 20.04.1 LTS
have Ubuntu afni : Precompiled binary linux_ubuntu_16_64: Jan 11 2021

========================= summary, please fix: =========================
* just be aware: login shell 'bash', but our code examples use 'tcsh'
* insufficient data for AFNI bootcamp
Subject Author Posted

Cluster Explorer

Dxc536 November 09, 2021 09:54AM

Re: Cluster Explorer

discoraj November 09, 2021 10:28AM

Re: Cluster Explorer

Dxc536 November 09, 2021 02:28PM