Thanks a lot Peter.
I ran the following
3dROIstats -mask Parcellations/MNI/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_2mm.nii.gz rsfMRI.nii.gz > test.1D
Schaefer2018_200Parcels_7Networks_order_FSLMNI152_2mm.nii.gz has 200 ROIs
rsfMRI.nii.gz has 187 volumes.
I have attached a snapshot of the 1D file.
When I try to plot the 1D file using 1Dplot, I get the following error
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1dplot test.1D
++ 1dplot: AFNI version=AFNI_21.1.19 (Jun 25 2021) [64-bit]
++ Authored by: RWC et al.
** Error: Failed parsing data row 0 of 1D file 'test.1D'
Check for illegal non-numeric characters in:
'File Sub-brick Mean_1 Mean_2 Mean_3 Mean_4 Mean_5 ...'
You can have text entries set to 0 with -ok_1D_text or by
setting environment variable AFNI_1D_ZERO_TEXT to YES.
** FATAL ERROR: Can't read input file 'test.1D' iarg=1
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Can you suggest what am I doing wrong ?
Many thanks
Ri