AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 10, 2021 03:20PM
Thanks a lot Peter.

I ran the following

3dROIstats -mask Parcellations/MNI/Schaefer2018_200Parcels_7Networks_order_FSLMNI152_2mm.nii.gz rsfMRI.nii.gz > test.1D

Schaefer2018_200Parcels_7Networks_order_FSLMNI152_2mm.nii.gz has 200 ROIs

rsfMRI.nii.gz has 187 volumes.

I have attached a snapshot of the 1D file.

When I try to plot the 1D file using 1Dplot, I get the following error
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1dplot test.1D
++ 1dplot: AFNI version=AFNI_21.1.19 (Jun 25 2021) [64-bit]
++ Authored by: RWC et al.

** Error: Failed parsing data row 0 of 1D file 'test.1D'
Check for illegal non-numeric characters in:
'File Sub-brick Mean_1 Mean_2 Mean_3 Mean_4 Mean_5 ...'
You can have text entries set to 0 with -ok_1D_text or by
setting environment variable AFNI_1D_ZERO_TEXT to YES.
** FATAL ERROR: Can't read input file 'test.1D' iarg=1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Can you suggest what am I doing wrong ?

Many thanks

Ri
Attachments:
open | download - test.1Dsnap.png (2.22 MB)
Subject Author Posted

average time series from multiple ROIs

Rito November 10, 2021 12:31PM

Re: average time series from multiple ROIs

Peter Molfese November 10, 2021 12:51PM

Re: average time series from multiple ROIs Attachments

Rito November 10, 2021 03:20PM

Re: average time series from multiple ROIs

Peter Molfese November 10, 2021 04:40PM