afni.nimh.nih.gov

To be clear, there is no "-epi_strip" option for afni_proc.py, there is only -align_epi_strip_method.

Note that your -epi_strip follows the -align_opts_aea option. And since -epi_strip is unknown to afni_proc.py, it is passed directly to align_epi_anat.py, which is why there is the extra -epi_strip option in that command.

- rick



Edited 1 time(s). Last edit at 11/12/2021 04:14PM by rick reynolds.