Greetings,
I have errors in running my preprocessing script by using uber_subject.py. Details are as follows
for i in 'cat subjList.txt'; do
> tcsh proc_mci.sh $i;
> mv ${i}.results $i;
> done
auto-generated by afni_proc.py, Tue Nov 23 12:40:47 2021
(version 7.17, July 16, 2021)
execution started: Wed Nov 24 11:31:18 PKT 2021
Precompiled binary linux_ubuntu_16_64: Jul 28 2021 (Version AFNI_21.2.04 'Nerva')
-- is current: afni_history as new as: 27 Jun 2019
most recent entry is: 27 Jul 2021
++ 3dcopy: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
** FATAL ERROR: 3dcopy needs input AND output filenames!
** Program compile date = Jul 28 2021
cat.results/cat_T2: Command not found.
++ 3dTcat: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
** FATAL ERROR: Can't open dataset /mnt/d/Fizza/84/mci/sub-01/cat/func/cat_rest-MCI.nii
** Program compile date = Jul 28 2021
++ 3dToutcount: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
** Can't open dataset pb00.cat.r01.tcat+orig
** ERROR: mri_read_ascii: can't read any valid data from file outcount.r01.1D
** Can't read time series file outcount.r01.1D{0}
++ 3dTstat: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
++ Authored by: KR Hammett & RW Cox
** ERROR: mri_read_ascii: can't read any valid data from file outcount_rall.1D
** Can't read 1D dataset file outcount_rall.1D'
** FATAL ERROR: Can't open dataset outcount_rall.1D'
** Program compile date = Jul 28 2021
min outlier: run out.pre_ss_warn.txt outcount.r01.1D outcount_rall.1D stimuli, TR error:
++ 3dTshift: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
** FATAL ERROR: Can't open input dataset 'pb00.cat.r01.tcat+orig'
** Program compile date = Jul 28 2021
++ 3dbucket: AFNI version=AFNI_21.2.04 (Jul 28 2021) [64-bit]
can't open dataset pb01.cat.rout.pre_ss_warn.txt
#++ align_epi_anat version: 1.62
#++ turning off volume registration
** ERROR: Could not find epi / dset2 dataset
/mnt/d/Fizza/84/mci/sub-01/cat.results/vr_base_min_outlier+orig
** ERROR - script failed
Error: Anatomical dset sub-01_T2_ns+orig not found.
** ERROR: THD_read_dvecmat: can't open dataset sub-01_T2_ns+tlrc
** FATAL ERROR: Can't read matrix from 'sub-01_T2_ns+tlrc::WARP_DATA'
** Program compile date = Jul 28 2021
** missing +tlrc warp dataset: sub-01_T2_ns+tlrc.HEAD
mv: target 'subjList.txt' is not a directory
