AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 13, 2021 03:25PM
Hi AFNI gurus,

Im trying to run a regression looking at change in some clinical score (BPRS) with baseline functional connectivity using 3dMVM with some covariates. I'm only looking at one group only (not doing 2-group comparisons). Here's my script

3dMVM -prefix pathtoprefix/results_3MVM_ECN_baseline.nii -jobs 12 \
-mask pathtomask/ECN_mask.nii \
-bsVars 1 \
-wsVars 'BPRS+age+sex+FD' \
-qVars 'age,FD' \
-SS_type 3 \
-dataTable \
Subj BPRS age sex FD InputFile \
sub-patient01 56.25 25 1 0.1971614 /connmap_sub-patient01_ses-01_ECN.nii \
sub-patient03 78.95 28 2 0.1366462 /connmap_sub-patient03_ses-01_ECN.nii \
sub-patient05 76.47 22 2 0.1146088 /connmap_sub-patient05_ses-01_ECN.nii \
sub-patient06 66.67 24 1 0.106127 /connmap_sub-patient06_ses-01_ECN.nii \
sub-patient07 80 18 2 0.1333833 /connmap_sub-patient07_ses-01_ECN.nii \
...

Everything seems to be working fine until I get this message:

Reading input files now...

Reading input files: Done!

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.


It get's stuck there, so I'm guessing there must be something wrong, but can't seem to find what it is.

Thank you,
O
Subject Author Posted

3dMVM

Omar Maximo December 13, 2021 03:25PM

Re: 3dMVM

gang December 15, 2021 07:45AM

Re: 3dMVM

Omar Maximo December 15, 2021 10:02AM

Re: 3dMVM

Omar Maximo December 15, 2021 11:37AM