AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Matthew Hoptman
February 26, 2022 11:21AM
Hi all,
I am trying to compile afni v. 19.2.24 source code on an ubuntu 16.04 system.

I copied Makefile.linux_xorg7_64 to Makefile and got:
/usr/bin/gcc -V 32 -O2 -m64 -fPIC -ffast-math -mmmx -DREAD_WRITE_64 -DLINUX2 -DXORG7 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DDONT_USE_XTDESTROY -D__COMPILE_UNUSED_FUNCTIONS__ -c nifti/nifticdf/nifticdf.c -I. -I/usr/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
gcc: error: 32: No such file or directory
gcc: error: unrecognized command line option ‘-V’
Makefile.INCLUDE:3488: recipe for target 'nifticdf.o' failed
make: *** [nifticdf.o] Error 1

If I copy Makefile.linux_ubuntu_16_64 to Makefile and then did "make totality". I eventually get the error:
make[2]: Leaving directory '/home/matt/AFNI_19.2.24/SUMA/MarchingCubes'
/usr/bin/gcc -O2 -m64 -fPIC -DREAD_WRITE_64 -DLINUX2 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DSUMA_COMPILED -I/usr/X11R6/include -I./ -I../ -I../niml/ -Igts/src -I/usr/include/glib-1.2 -I/usr/include/glib-2.0 -I/usr/lib64/glib/include -I/usr/lib64/glib-2.0/include -I/usr/lib/x86_64-linux-gnu/glib-2.0/include/ -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -c SUMA_trackball.c
In file included from SUMA_trackball.c:1:0:
SUMA_suma.h:126:60: fatal error: GL/GLwDrawA.h: No such file or directory
compilation terminated.
SUMA_Makefile_NoDev:174: recipe for target 'SUMA_trackball.o' failed
make[1]: *** [SUMA_trackball.o] Error 1
make[1]: Leaving directory '/home/matt/AFNI_19.2.24/SUMA'
/bin/cp: cannot stat 'SUMA/libSUMA.a': No such file or directory
/bin/cp: cannot stat 'SUMA/libSUMA.a': No such file or directory
Makefile.INCLUDE:3631: recipe for target 'libSUMA.a' failed
make: *** [libSUMA.a] Error 1

I am using gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12). Any suggestions on what to do?
Is there a precompiled binary of that version available on the website?
Thanks,
Matt
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Subject Author Posted

Cannot compile version 19.2.24 on ubuntu 16.04

Matthew Hoptman February 26, 2022 11:21AM

Re: Cannot compile version 19.2.24 on ubuntu 16.04

rick reynolds February 26, 2022 06:02PM

Re: Cannot compile version 19.2.24 on ubuntu 16.04

Matthew Hoptman March 01, 2022 09:33AM