AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 14, 2022 11:27AM
Hi Marina,

The regression matrix should be first put together by 3dDeconvolve, and then passed to 3dREMLfit.
When running an analysis with afni_proc.py, this can be done using -regress_reml_exec (and probably -regress_3dD_stop).

To do it directly with 3dDeconvolve and 3dREMLfit, just run a normal 3dDeconvolve command, but add -x1D_stop.
It will output a 3dREMLfit script that can then be run.

- rick
Subject Author Posted

3dREMLfit input

Marina Fernandez Alvarez March 14, 2022 08:58AM

Re: 3dREMLfit input

rick reynolds March 14, 2022 11:27AM