afni.nimh.nih.gov

Hello,

Thank you for replying. I am working on a group level t-test.
The script is below. I have only included the first 5 subjects in each group due to space constraints.


cd /nfs/mint/results/gng/SubjectsFolders/Test_All_Subj

set output_dir = /nfs/mint/results/gng/SubjectsFolders/GroupAnalysis/Take2

#GO_ANGRY

set output = go_angry_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[1]' \
2 AP1129.results/stats.AP1129+tlrc.'[1]' \
3 AR1342.results/stats.AR1342+tlrc.'[1]' \
4 BK1041.results/stats.BK1041+tlrc.'[1]' \
5 BK1268.results/stats.BK1268+tlrc.'[1]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[1]' \
50 AD1173.results/stats.AD1173+tlrc.'[1]' \
51 AM1304.results/stats.AM1304+tlrc.'[1]' \
52 AM1319.results/stats.AM1319+tlrc.'[1]' \
53 AP1162.results/stats.AP1162+tlrc.'[1]' \
54 AS1001.results/stats.AS1001+tlrc.'[1]' \


3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#GO_ANGRY_OM


set output = go_angry_om_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[4]' \
2 AP1129.results/stats.AP1129+tlrc.'[4]' \
3 AR1342.results/stats.AR1342+tlrc.'[4]' \
4 BK1041.results/stats.BK1041+tlrc.'[4]' \
5 BK1268.results/stats.BK1268+tlrc.'[4]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[4]' \
50 AD1173.results/stats.AD1173+tlrc.'[4]' \
51 AM1304.results/stats.AM1304+tlrc.'[4]' \
52 AM1319.results/stats.AM1319+tlrc.'[4]' \
53 AP1162.results/stats.AP1162+tlrc.'[4]' \
54 AS1001.results/stats.AS1001+tlrc.'[4]' \


3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Angry

set output = nogo_angry_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[7]' \
2 AP1129.results/stats.AP1129+tlrc.'[7]' \
3 AR1342.results/stats.AR1342+tlrc.'[7]' \
4 BK1041.results/stats.BK1041+tlrc.'[7]' \
5 BK1268.results/stats.BK1268+tlrc.'[7]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[7]' \
50 AD1173.results/stats.AD1173+tlrc.'[7]' \
51 AM1304.results/stats.AM1304+tlrc.'[7]' \
52 AM1319.results/stats.AM1319+tlrc.'[7]' \
53 AP1162.results/stats.AP1162+tlrc.'[7]' \
54 AS1001.results/stats.AS1001+tlrc.'[7]' \
55 AS1017.results/stats.AS1017+tlrc.'[7]' \


3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Angry Comm

set output = nogo_angry_comm_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[10]' \
2 AP1129.results/stats.AP1129+tlrc.'[10]' \
3 AR1342.results/stats.AR1342+tlrc.'[10]' \
4 BK1041.results/stats.BK1041+tlrc.'[10]' \
5 BK1268.results/stats.BK1268+tlrc.'[10]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[10]' \
50 AD1173.results/stats.AD1173+tlrc.'[10]' \
51 AM1304.results/stats.AM1304+tlrc.'[10]' \
52 AM1319.results/stats.AM1319+tlrc.'[10]' \
53 AP1162.results/stats.AP1162+tlrc.'[10]' \
54 AS1001.results/stats.AS1001+tlrc.'[10]' \
55 AS1017.results/stats.AS1017+tlrc.'[10]' \


3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Fear

set output = go_fear_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 BK1268.results/stats.BK1268+tlrc.'[13]' \
1 AH1346.results/stats.AH1346+tlrc.'[13]'
2 AP1129.results/stats.AP1129+tlrc.'[13]' \
3 AR1342.results/stats.AR1342+tlrc.'[13]' \
4 BK1041.results/stats.BK1041+tlrc.'[13]' \
5 BK1268.results/stats.BK1268+tlrc.'[13]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[13]' \
50 AD1173.results/stats.AD1173+tlrc.'[13]'
51 AM1304.results/stats.AM1304+tlrc.'[13]' \
52 AM1319.results/stats.AM1319+tlrc.'[13]' \
53 AP1162.results/stats.AP1162+tlrc.'[13]' \
54 AS1001.results/stats.AS1001+tlrc.'[13]' \
55 AS1017.results/stats.AS1017+tlrc.'[13]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Fear Omission

set output = go_fear_om_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[16]' \
2 AP1129.results/stats.AP1129+tlrc.'[16]' \
3 AR1342.results/stats.AR1342+tlrc.'[16]' \
4 BK1041.results/stats.BK1041+tlrc.'[16]' \
5 BK1268.results/stats.BK1268+tlrc.'[16]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[16]' \
50 AD1173.results/stats.AD1173+tlrc.'[16]' \
51 AM1304.results/stats.AM1304+tlrc.'[16]' \
52 AM1319.results/stats.AM1319+tlrc.'[16]' \
53 AP1162.results/stats.AP1162+tlrc.'[16]' \
54 AS1001.results/stats.AS1001+tlrc.'[16]' \
55 AS1017.results/stats.AS1017+tlrc.'[16]' \


3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Fear

set output = nogo_fear_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[19]' \
2 AP1129.results/stats.AP1129+tlrc.'[19]' \
3 AR1342.results/stats.AR1342+tlrc.'[19]' \
4 BK1041.results/stats.BK1041+tlrc.'[19]' \
5 BK1268.results/stats.BK1268+tlrc.'[19]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[19]' \
50 AD1173.results/stats.AD1173+tlrc.'[19]' \
51 AM1304.results/stats.AM1304+tlrc.'[19]' \
52 AM1319.results/stats.AM1319+tlrc.'[19]' \
53 AP1162.results/stats.AP1162+tlrc.'[19]' \
54 AS1001.results/stats.AS1001+tlrc.'[19]' \
55 AS1017.results/stats.AS1017+tlrc.'[19]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Fear Comm

set output = nogo_fear_comm_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[22]' \
2 AP1129.results/stats.AP1129+tlrc.'[22]' \
3 AR1342.results/stats.AR1342+tlrc.'[22]' \
4 BK1041.results/stats.BK1041+tlrc.'[22]' \
5 BK1268.results/stats.BK1268+tlrc.'[22]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[22]' \
50 AD1173.results/stats.AD1173+tlrc.'[22]' \
51 AM1304.results/stats.AM1304+tlrc.'[22]' \
52 AM1319.results/stats.AM1319+tlrc.'[22]' \
53 AP1162.results/stats.AP1162+tlrc.'[22]' \
54 AS1001.results/stats.AS1001+tlrc.'[22]' \
55 AS1017.results/stats.AS1017+tlrc.'[22]' \



3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Happy

set output = go_happy_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[25]' \
2 AP1129.results/stats.AP1129+tlrc.'[25]' \
3 AR1342.results/stats.AR1342+tlrc.'[25]' \
4 BK1041.results/stats.BK1041+tlrc.'[25]' \
5 BK1268.results/stats.BK1268+tlrc.'[25]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[25]' \
50 AD1173.results/stats.AD1173+tlrc.'[25]' \
51 AM1304.results/stats.AM1304+tlrc.'[25]' \
52 AM1319.results/stats.AM1319+tlrc.'[25]' \
53 AP1162.results/stats.AP1162+tlrc.'[25]' \
54 AS1001.results/stats.AS1001+tlrc.'[25]' \
55 AS1017.results/stats.AS1017+tlrc.'[25]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Happy Omission

set output = go_happy_om_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 BK1268.results/stats.BK1268+tlrc.'[28]' \
1 AH1346.results/stats.AH1346+tlrc.'[28]' \
2 AP1129.results/stats.AP1129+tlrc.'[28]' \
3 AR1342.results/stats.AR1342+tlrc.'[28]' \
4 BK1041.results/stats.BK1041+tlrc.'[28]' \
5 BK1268.results/stats.BK1268+tlrc.'[28]' \

\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[28]' \
50 AD1173.results/stats.AD1173+tlrc.'[28]' \
51 AM1304.results/stats.AM1304+tlrc.'[28]' \
52 AM1319.results/stats.AM1319+tlrc.'[28]' \
53 AP1162.results/stats.AP1162+tlrc.'[28]' \
54 AS1001.results/stats.AS1001+tlrc.'[28]' \
55 AS1017.results/stats.AS1017+tlrc.'[28]' \



3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Happy

set output = nogo_happy_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[31]' \
2 AP1129.results/stats.AP1129+tlrc.'[31]' \
3 AR1342.results/stats.AR1342+tlrc.'[31]' \
4 BK1041.results/stats.BK1041+tlrc.'[31]' \
5 BK1268.results/stats.BK1268+tlrc.'[31]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[31]' \
50 AD1173.results/stats.AD1173+tlrc.'[31]' \
51 AM1304.results/stats.AM1304+tlrc.'[31]' \
52 AM1319.results/stats.AM1319+tlrc.'[31]' \
53 AP1162.results/stats.AP1162+tlrc.'[31]' \
54 AS1001.results/stats.AS1001+tlrc.'[31]' \
55 AS1017.results/stats.AS1017+tlrc.'[31]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Happy Comm

set output = nogo_happy_comm_ttest_gng


3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[34]' \
2 AP1129.results/stats.AP1129+tlrc.'[34]' \
3 AR1342.results/stats.AR1342+tlrc.'[34]' \
4 BK1041.results/stats.BK1041+tlrc.'[34]' \
5 BK1268.results/stats.BK1268+tlrc.'[34]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[34]' \
50 AD1173.results/stats.AD1173+tlrc.'[34]' \
51 AM1304.results/stats.AM1304+tlrc.'[34]' \
52 AM1319.results/stats.AM1319+tlrc.'[34]' \
53 AP1162.results/stats.AP1162+tlrc.'[34]' \
54 AS1001.results/stats.AS1001+tlrc.'[34]' \
55 AS1017.results/stats.AS1017+tlrc.'[34]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Control

set output = go_control_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[37]' \
2 AP1129.results/stats.AP1129+tlrc.'[37]' \
3 AR1342.results/stats.AR1342+tlrc.'[37]' \
4 BK1041.results/stats.BK1041+tlrc.'[37]' \
5 BK1268.results/stats.BK1268+tlrc.'[37]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[37]' \
50 AD1173.results/stats.AD1173+tlrc.'[37]' \
51 AM1304.results/stats.AM1304+tlrc.'[37]' \
52 AM1319.results/stats.AM1319+tlrc.'[37]' \
53 AP1162.results/stats.AP1162+tlrc.'[37]' \
54 AS1001.results/stats.AS1001+tlrc.'[37]' \
55 AS1017.results/stats.AS1017+tlrc.'[37]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#Go Control Omission

set output = go_control_om_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[40]' \
2 AP1129.results/stats.AP1129+tlrc.'[40]' \
3 AR1342.results/stats.AR1342+tlrc.'[40]' \
4 BK1041.results/stats.BK1041+tlrc.'[40]' \
5 BK1268.results/stats.BK1268+tlrc.'[40]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[40]' \
50 AD1173.results/stats.AD1173+tlrc.'[40]' \
51 AM1304.results/stats.AM1304+tlrc.'[40]' \
52 AM1319.results/stats.AM1319+tlrc.'[40]'
53 AP1162.results/stats.AP1162+tlrc.'[40]' \
54 AS1001.results/stats.AS1001+tlrc.'[40]' \
55 AS1017.results/stats.AS1017+tlrc.'[40]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Control

set output = nogo_control_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[43]' \
2 AP1129.results/stats.AP1129+tlrc.'[43]' \
3 AR1342.results/stats.AR1342+tlrc.'[43]' \
4 BK1041.results/stats.BK1041+tlrc.'[43]' \
5 BK1268.results/stats.BK1268+tlrc.'[43]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[43]' \
50 AD1173.results/stats.AD1173+tlrc.'[43]' \
51 AM1304.results/stats.AM1304+tlrc.'[43]' \
52 AM1319.results/stats.AM1319+tlrc.'[43]' \
53 AP1162.results/stats.AP1162+tlrc.'[43]' \
54 AS1001.results/stats.AS1001+tlrc.'[43]' \
55 AS1017.results/stats.AS1017+tlrc.'[43]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

#No Go Control Comm

set output = nogo_control_comm_ttest_gng

3dttest++ -prefix ${output_dir}/${output} \
\
-setA TD \
\
1 AH1346.results/stats.AH1346+tlrc.'[46]' \
2 AP1129.results/stats.AP1129+tlrc.'[46]' \
3 AR1342.results/stats.AR1342+tlrc.'[46]' \
4 BK1041.results/stats.BK1041+tlrc.'[46]' \
5 BK1268.results/stats.BK1268+tlrc.'[46]' \
\
-setB ADHD \
\
49 AA1299.results/stats.AA1299+tlrc.'[46]' \
50 AD1173.results/stats.AD1173+tlrc.'[46]' \
51 AM1304.results/stats.AM1304+tlrc.'[46]' \
52 AM1319.results/stats.AM1319+tlrc.'[46]' \
53 AP1162.results/stats.AP1162+tlrc.'[46]' \
54 AS1001.results/stats.AS1001+tlrc.'[46]' \
55 AS1017.results/stats.AS1017+tlrc.'[46]' \

3dcalc -a ${output_dir}/rsttest+tlrc. -b ${output_dir}/${output}+tlrc. -expr 'ispositive(a)*b' -prefix ${output_dir}/${output}_masked

echo "end"