Hello,
Is there an advantage in SurfSmooth to passing multiple surfaces using the -surf_A, surf_B commands. In the afni_proc generated example, -surf_A is used to specify the smoothwm surface. I have seen some examples where both smoothwm and pial are passed with surf_A and surf_B, respectively. How does the program behave differently if two surfaces are given instead of one. I've pasted two sample calls below:
SurfSmooth -spec /workingdir/Nifti/derivatives/sourcedata/freesurfer/fsaverage/SUMA/fsaverage_lh.spec \
-surf_A smoothwm \
-input $subj.r$run.hemi-${hem}.tcat.func.gii \
-met HEAT_07 \
-target_fwhm 9.0 \
-blurmaster rm.errts.$subj.r$run.hemi-${hem}.func_REML.gii \
-output $subj.r${run}.hemi-${hem}.blur.func.gii
SurfSmooth -spec /workingdir/Nifti/derivatives/sourcedata/freesurfer/fsaverage/SUMA/fsaverage_lh.spec \
-surf_A smoothwm \
-surf_B pial \
-input $subj.r$run.hemi-${hem}.tcat.func.gii \
-met HEAT_07 \
-target_fwhm 9.0 \
-blurmaster rm.errts.$subj.r$run.hemi-${hem}.func_REML.gii \
-output $subj.r${run}.hemi-${hem}.blur.func.gii
Thanks in advance!
