AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 28, 2022 08:25PM
Hi Cesar,

This might be another reason for you to consider compiling on your ARM system.

The R programs (like 3dMVM) are scripts that run R and load our compiled R_io.so library for dataset I/O. That version of AFNI has R_io.so linked to an Intel version of the build machine's R library.

But since 3dMVM is a script, in your case it is running an ARM version of R, and that is refusing to load Intel shared libraries. In order to use R_io.so, you would need to be running an Intel version of R.

Given that, the R version itself, and difficulty with our signing the complete package, you should probably consider compiling AFNI locally on an ARM mac.

Unfortunately, someone (with my initials) has not written convenient build scripts, and some are looking into the possibility of making a brew package, which has its own difficulties. But given an AFNI src directory, and assuming you have installed packages according to afni/src/other_builds/OS_notes.macos_11_ARM.txt, it might be enough to run:

cd afni/src
cp Makefile.macos_11_ARM_clang Makefile
make itall

and then sync the results to your abin. Is that something that you might consider?

- rick
Subject Author Posted

error loading R_io.so

Cesar Caballero Gaudes September 28, 2022 01:00PM

Re: error loading R_io.so

rick reynolds September 28, 2022 08:25PM

Re: error loading R_io.so

Cesar Caballero Gaudes September 29, 2022 06:54PM