AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mironside
October 26, 2022 11:27AM
Thanks so much Gang,

I followed the manual to add these but it still isn't working.
Apologies if I am missing something obvious, I am new to AFNI.

Best,
Maria 

3dMVM \
-prefix 3dMVM.FC.PlusvMinus.65Dep.130DepAnx \
 -bsVars 'group' \
 -wsVars 'run' \
 -jobs 20  \
 -num_glt 13  \
 -gltLabel 1 'R2EvR1' -gltCode 1 'run : 1*R2E -1*R1' \
 -gltLabel 2 'R2LvR1' -gltCode 2 'run : 1*R2L -1*R1' \
 -gltLabel 3 'R3EvR1' -gltCode 3 'run : 1*R3E -1*R1' \
 -gltLabel 4 'R3LvR1' -gltCode 4 'run : 1*R3L -1*R1' \
 -gltLabel 5 'R4EvR3L' -gltCode 5 'run : 1*R4E -1*R3L' \
 -gltLabel 6 'R4LvR3L' -gltCode 6 'run : 1*R4L -1*R3L' \
 -gltLabel 7 'DvDA_R1' -gltCode 7 'group : 1*DepAnx -1*Dep run : 1*R1' \
 -gltLabel 8 'DvDA_R2E' -gltCode 8 'group : 1*DepAnx -1*Dep run : 1*R2E' \
 -gltLabel 9 'DvDA_R2L' -gltCode 9 'group : 1*DepAnx -1*Dep run : 1*R2L' \
 -gltLabel 10 'DvDA_R3E' -gltCode 10 'group : 1*DepAnx -1*Dep run : 1*R3E' \
 -gltLabel 11 'DvDA_R3L' -gltCode 11 'group : 1*DepAnx -1*Dep run : 1*R3L' \
 -gltLabel 12 'DvDA_R4E' -gltCode 12 'group : 1*DepAnx -1*Dep run : 1*R4E' \
 -gltLabel 13 'DvDA_R4L' -gltCode 13 'group : 1*DepAnx -1*Dep run : 1*R4L' \
 -num_glf 6  \
 -glfLabel 1 'DvDA_R2EvR1' -glfCode 1 'group : 1*DepAnx -1*Dep run : 1*R2E -1*R1' \
 -glfLabel 2 'DvDA_R2LvR1' -glfCode 2 'group : 1*DepAnx -1*Dep run : 1*R2L -1*R1' \
 -glfLabel 3 'DvDA_R3EvR1' -glfCode 3 'group : 1*DepAnx -1*Dep run : 1*R3E -1*R1' \
 -glfLabel 4 'DvDA_R3LvR1' -glfCode 4 'group : 1*DepAnx -1*Dep run : 1*R3L -1*R1' \
 -glfLabel 5 'DvDA_R4EvR3L' -glfCode 5 'group : 1*DepAnx -1*Dep run : 1*R4E -1*R3L' \
 -glfLabel 6 'DvDA_R4LvR3L' -glfCode 6 'group : 1*DepAnx -1*Dep run : 1*R4L -1*R3L' \
 -dataTable \
 Subj group run InputFile \
 AA438 DepAnx '[R1]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusR1_GLT#0_Coef]' \
 AA438 DepAnx '[R2E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR2_GLT#0_Coef]' \
 AA438 DepAnx '[R2L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusLateR2_GLT#0_Coef]' \
 AA438 DepAnx '[R3E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR3_GLT#0_Coef]' \
 AA438 DepAnx '[R3L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusLateR3_GLT#0_Coef]' \
 AA438 DepAnx '[R4E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR4_GLT#0_Coef]' \
 AA438 DepAnx '[R4L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc'[PlusvMinusLateR4_GLT#0_Coef]' \
 AB903 Dep '[R1]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusR1_GLT#0_Coef]' \
 AB903 Dep '[R2E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR2_GLT#0_Coef]' \
 AB903 Dep '[R2L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusLateR2_GLT#0_Coef]' \
 AB903 Dep '[R3E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR3_GLT#0_Coef]' \
 AB903 Dep '[R3L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusLateR3_GLT#0_Coef]' \
 AB903 Dep '[R4E]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusEarlyR4_GLT#0_Coef]' \
 AB903 Dep '[R4L]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc'[PlusvMinusLateR4_GLT#0_Coef]' \
 AC609 DepAnx '[R1]' /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc'[PlusvMinusR1_GLT#0_Coef]' \
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Subject Author Posted

3dMVM: Inappropriate coding in test No.1!

mironside October 24, 2022 05:28PM

Re: 3dMVM: Inappropriate coding in test No.1!

gang October 25, 2022 07:39AM

Re: 3dMVM: Inappropriate coding in test No.1!

mironside October 26, 2022 11:27AM

Re: 3dMVM: Inappropriate coding in test No.1!

gang October 26, 2022 04:07PM

Re: 3dMVM: Inappropriate coding in test No.1!

mironside November 04, 2022 12:41PM