History of AFNI updates  

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December 13, 2022 10:23AM
This is the output of the code that you provided for the raw functional scan:

N-1 header file 'task-eoec_bold.nii.gz', num_fields = 1
  name                offset  nvals  values
  ------------------- ------  -----  ------
  pixdim                76      8    -1.0 3.203125 3.203125 3.2 0.0 0.0 0.0 0.0

And this is the output of 3dinfo for the exact same file:

Identifier Code: NII_gdAWnoolfeS8ElHNF-3QOA  Creation Date: Tue Dec 13 16:27:35 2022
Template Space:  ORIG
Dataset Type:    Echo Planar (-epan)
Byte Order:      LSB_FIRST {assumed} [this CPU native = LSB_FIRST]
Storage Mode:    NIFTI
Storage Space:   179,806,208 (180 million) bytes
Geometry String: "MATRIX(3.203125,-3.20312e-16,2.182395e-16,-101.9189,-3.20312e-16,-2.342617,2.182395,25.05877,0,2.184526,2.340332,-116.7211):64,64,47"
Data Axes Tilt:  Oblique (43.000 deg. from plumb)
Data Axes Approximate Orientation:
  first  (x) = Right-to-Left
  second (y) = Posterior-to-Anterior
  third  (z) = Inferior-to-Superior   [-orient RPI]
R-to-L extent:  -101.919 [R] -to-    99.878 [L] -step-     3.203 mm [ 64 voxels]
A-to-P extent:  -176.738 [A] -to-    25.059 [P] -step-     3.203 mm [ 64 voxels]
I-to-S extent:  -116.721  -to-    30.479 [S] -step-     3.200 mm [ 47 voxels]
Number of time steps = 467  Time step = 1.00000s  Origin = 0.00000s
  -- At sub-brick #0 '?' datum type is short
  -- At sub-brick #1 '?' datum type is short
  -- At sub-brick #2 '?' datum type is short
** For info on all 467 sub-bricks, use '3dinfo -verb' **




Edited 1 time(s). Last edit at 12/13/2022 10:28AM by Philipp.
Subject Author Posted

TR differs in nifti and header (and other info)

ptaylor December 13, 2022 07:16AM

Re: How to improve 3drefit’s deoblique results?

Philipp December 13, 2022 07:22AM

Re: How to improve 3drefit’s deoblique results?

ptaylor December 13, 2022 08:27AM

Re: How to improve 3drefit’s deoblique results?

Philipp December 13, 2022 10:23AM

Re: How to improve 3drefit’s deoblique results?

rick reynolds December 13, 2022 10:34AM

Re: How to improve 3drefit’s deoblique results?

Philipp December 13, 2022 10:37AM

Re: How to improve 3drefit’s deoblique results?

rick reynolds December 13, 2022 01:35PM