AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 03, 2023 10:02AM
I'm one of the people working on tedana.

What version of tedana are you using. AFNI should use whatever version of tedana is in your path so, if you type
tedana --version
that should tell you.

The most common reason this happens is if too many components are retained during the PCA dimensionality reduction step. As part of the tedana output, you should have a file called tedana_[date/time].tsv. There should be a section that looks like:
2022-11-22T15:17:19	pca.tedpca      	INFO    	Computing PCA of optimally combined multi-echo data with selection criteria: aic
2022-11-22T15:17:27	pca.tedpca      	INFO    	Optimal number of components based on different criteria:
2022-11-22T15:17:27	pca.tedpca      	INFO    	AIC: 71 | KIC: 62 | MDL: 42 | 90% varexp: 128 | 95% varexp: 162
2022-11-22T15:17:27	pca.tedpca      	INFO    	Explained variance based on different criteria:
2022-11-22T15:17:27	pca.tedpca      	INFO    	AIC: 0.802% | KIC: 0.784% | MDL: 0.735% | 90% varexp: 0.9% | 95% varexp: 0.95%


For this dataset, I am using the AIC selection criterion which gives me 71 components with an explained variance of 80.2%. (This specific dataset has 200 volumes total). What numbers are you seeing here? You can either cut & paste this section, or attach your output file here.

Dan
Subject Author Posted

ICA failed to converge

MichalZam December 26, 2022 09:49AM

Re: ICA failed to converge

ptaylor December 26, 2022 06:33PM

Re: ICA failed to converge

MichalZam December 27, 2022 05:56AM

Re: ICA failed to converge

ptaylor December 30, 2022 11:32AM

Re: ICA failed to converge

MichalZam January 03, 2023 06:52AM

Re: ICA failed to converge

handwerkerd January 03, 2023 10:02AM