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Dear AFNI users-

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Sincerely, AFNI HQ

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dante.picchioni
December 28, 2022 09:08AM
Dear Colleagues,

Hi. I executed identical 3dLME code twice. Once with:

AFNI/current-openmp last updated 2022-05-28
AFNI version=AFNI_22.1.10 (May 20 2022) [64-bit]

and again with:

AFNI/current-openmp last updated 2022-12-26
AFNI version=AFNI_22.3.07 (Dec 2 2022) [64-bit]

No problems with the first execution. With the second execution, I received this error:

Error in if (is.na(gltRes[[n]])) fm <- NULL :
the condition has length > 1
Execution halted

Please see below for an excerpt of the code.

Sincerely,

Dante

prepro=(
"procbasic_ric_rvt_ppga"
)
for (( i=0 ; i<${#prepro[@]} ; ++i )) ; do
3dLME \
-prefix output.LME.ranslp_"${prepro}" \
-jobs 8 \
-model 'cond*AAT' \
-qVars AAT \
-ranEff '~1+AAT' \
-SS_type 3 \
-num_glt 1 \
-logLik \
-gltLabel 1 'AATeff' \
-gltCode 1 'AAT : ' \
-dataTable \
Subj cond AAT InputFile \
s00003 aro1 70 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160713_2255_"${prepro}"_pcc_coef_abs.nii \
s00003 aro2 25 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160713_2326_"${prepro}"_pcc_coef_abs.nii \
s00003 aro3 35 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160714_0004_"${prepro}"_pcc_coef_abs.nii \
s00003 aro4 40 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160714_0040_"${prepro}"_pcc_coef_abs.nii \
s00003 aro5 70 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160714_0220_"${prepro}"_pcc_coef_abs.nii \
s00006 aro1 5 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160901_2245_"${prepro}"_pcc_coef_abs.nii \
s00006 aro2 0 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20160901_2300_"${prepro}"_pcc_coef_abs.nii \
...
s00105 aro4 35 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20170413_0406_"${prepro}"_pcc_coef_abs.nii \
s00105 aro5 0 /data/AMRI/picchioni/20211103_pilot_lmm_03.07_add_prepro_etc/unix_files/subanalysis_3dlme_02/20170413_0535_"${prepro}"_pcc_coef_abs.nii
done
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Subject Author Posted

Weird 3dLME error

dante.picchioni December 28, 2022 09:08AM

Re: Weird 3dLME error

gang December 29, 2022 08:50AM

Re: Weird 3dLME error

dante.picchioni December 30, 2022 09:06AM