AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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smoia
January 10, 2023 07:55AM
Hi everyone,
thank you for all of your feedback!

It looks like I finally managed to compile it from source!
I unset CC and CXX, and run `make itall` without parallel jobs (pity, cause it takes a while, but it works!)
I also run rPkgsInstall, specifying R_LIBS as the folder where I installed R system-wise (/usr/lib/R in my case).
I didn't run a formal test, but R-based programs like 3dICC are now available and not angrily protesting missing R libraries!

Is this the suggested way to build AFNI? Should I check again neurodocker's installation, or `make vastness` is still a valid option?

Thank you for the help!
Cheers,
Stefano
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Subject Author Posted

Issues in building AFNI from source for a container

smoia January 05, 2023 09:57AM

Re: Issues in building AFNI from source for a container

rick reynolds January 05, 2023 10:32AM

Re: Issues in building AFNI from source for a container

Daniel Glen January 05, 2023 02:13PM

Re: Issues in building AFNI from source for a container

smoia January 05, 2023 04:53PM

Re: Issues in building AFNI from source for a container

ptaylor January 05, 2023 05:36PM

Re: Issues in building AFNI from source for a container

rick reynolds January 05, 2023 06:08PM

Re: Issues in building AFNI from source for a container

Daniel Glen January 06, 2023 07:17PM

Re: Issues in building AFNI from source for a container

smoia January 10, 2023 07:55AM

Re: Issues in building AFNI from source for a container

ptaylor January 10, 2023 07:59AM

Re: Issues in building AFNI from source for a container

rick reynolds January 10, 2023 09:23AM