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January 13, 2023 06:58PM
Hi there AFNI team,

I have a couple of quick questions I was hoping to get clarification on.

1. If a timing .txt file has all of the times listed (globally) from all 4 runs as a row instead of a column, will this still get appropriately interpreted by 3dDeconvolve? We use the "global_times" option as well.

2. When using To3D to convert Dicom files to AFNI, we have thus far specified the slice timing acquisition pattern as "alt+z". If it turns out the slice timing order should actually be "alt+z2", would this have had significant effects on the resulting analysis? Specifically with 3dTshift and 3dDeconvolve.

Thank you,
Ian
Subject Author Posted

Timing File and Slice Timing Question

brainboi January 13, 2023 06:58PM

Re: Timing File and Slice Timing Question

rick reynolds January 13, 2023 07:56PM

Re: Timing File and Slice Timing Question

brainboi January 17, 2023 01:30PM