AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 16, 2023 07:12PM
I've never looked at this demo nor this data, and I'm no expert on retinotopy, so I'm hoping we can figure some of this out together. I don't see the same image that you show. The retinotopy results include both phase and power columns for the surface data. If I show phase and threshold by the power, I get something fairly close to the second image. (See attached) Except for the occipital pole, the phase generally decreases in the demo data as it moves anteriorly within the posterior cortex. The settings used here for the display set the Sym off, min=0, max=360, and I've used the same color scale. To get this to run properly, I had to do this :

@AfniEnv -get AFNI_1D_ZERO_TEXT
@RetinoProc -install_demo
(if there are problems, then cd AfniRetinoDemo ; tcsh -x ./@Proc.All )

Start Demo display with :
cd RetProcOut.All
tcsh @ShowResult

The @Proc.All script calls @RetinoProc this way:

@RetinoProc \
-sid Hildebrand \
-surf_vol SUMA/Hildebrand_SurfVol+orig.HEAD \
-spec_left SUMA/Hildebrand_lh.spec \
-spec_right SUMA/Hildebrand_rh.spec \
-anat_vol afni/Hildebrand_3_1.nii \
-TR 2 \
-period_ecc 32 \
-period_pol 32 \
-nrings 1 \
-nwedges 2 \
-fwhm_ecc 8 \
-fwhm_pol 8 \
-pre_ecc 16 \
-pre_pol 16 \
-ccw afni/Hildebrand_4_1.nii \
afni/Hildebrand_8_1.nii \
afni/Hildebrand_12_1.nii \
-clw afni/Hildebrand_5_1.nii \
afni/Hildebrand_9_1.nii \
afni/Hildebrand_13_1.nii \
-exp afni/Hildebrand_6_1.nii \
afni/Hildebrand_10_1.nii \
afni/Hildebrand_14_1.nii \
-con afni/Hildebrand_7_1.nii \
afni/Hildebrand_11_1.nii \
afni/Hildebrand_15_1.nii \
-out_dir RetProcOut.All \
-no_tshift
Attachments:
open | download - retinoprocdemo.png (235.3 KB)
Subject Author Posted

Help RetinoProc stimulus

Lucafc97 February 06, 2023 08:15AM

Re: Help RetinoProc stimulus

Daniel Glen February 09, 2023 01:16PM

Re: Help RetinoProc stimulus Attachments

Lucafc97 February 16, 2023 10:41AM

Re: Help RetinoProc stimulus Attachments

Daniel Glen February 16, 2023 07:12PM

Re: Help RetinoProc stimulus

Lucafc97 February 17, 2023 05:29AM