AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
JW
February 17, 2023 11:29AM
Dear AFNI experts,

I am running 3dMVM and the script was working fine, but when I tested it again recently, it is not working with the error message below.

Reading input files now...

Reading input files: Done!

Range of input data: [0.000, 192.006]

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

Error in lop$gltList[[ii]] : subscript out of bounds
Execution halted






My script looks like below.


3dMVM -prefix age \
-qVars 'age,gender,edu,bmi,menopause' \
-bsVars 'age' \
-num_glt 1 \
-gltLabel 1 'age' -gltCode 1 'age:' \
-mask mask.nii.gz \
-dataTable \
Subj age sex edu bmi menopause InputFile \
subj1 47 0 18 33 1 subj1.nii\
subj2 36 0 12 34 1 subj2.nii\
.
.
.



I updated AFNI after the script successfully ran. Is it possible that AFNI update may have affected this?

Best,
JW
Subject Author Posted

3dMVM error (subscript out of bounds)

JW February 17, 2023 11:29AM

Re: 3dMVM error (subscript out of bounds)

gang February 18, 2023 09:52AM

Re: 3dMVM error (subscript out of bounds)

JW February 22, 2023 11:51AM

Re: 3dMVM error (subscript out of bounds)

JW February 24, 2023 03:22PM

Re: 3dMVM error (subscript out of bounds)

gang February 26, 2023 10:34PM

Re: 3dMVM error (subscript out of bounds)

JW March 01, 2023 11:25AM