Hello,
I'm new to AFNI and want to run the preprocessing afni_proc.py.
I cannot figure out why it has problems with volreg.
The error message is below:
++ applying anaticor without label, using 3dSeg mask
-- applying input view as +tlrc
-- will use min outlier volume as motion base
** already in tlrc space: -volreg_tlrc_* is not allowed
** invalid block : volreg
----------------------------------------------------------------------
** failed command (create_blocks):
afni_proc.py -subj_id 1002002 -out_dir \
/group/.../1002002_processed -script \
/home/.../scriptss/1002002/1002002 -scr_overwrite -dsets \
/group/.../1002002_V001_DMSRun1.nii -blocks \
despike tshift align tlrc volreg mask blur regress -copy_anat \
/group/northoff/share/sswarper_ang/1002002/anatSS.1002002.nii \
-anat_has_skull no -align_opts_aea -cost lpc+ZZ -big_move \
-volreg_align_e2a -volreg_align_to MIN_OUTLIER -volreg_tlrc_warp \
-tlrc_base MNI152_2009_template_SSW.nii.gz -tlrc_NL_warp \
-tlrc_NL_warped_dsets \
/group/northoff/share/sswarper_ang/1002002/anatQQ.1002002.nii \
/group/northoff/share/sswarper_ang/1002002/anatQQ.1002002.aff12.1D \
/group/northoff/share/sswarper_ang/1002002/anatQQ.1002002_WARP.nii \
-volreg_post_vr_allin yes -volreg_pvra_base_index MIN_OUTLIER \
-mask_segment_anat yes -mask_segment_erode yes -regress_anaticor \
-regress_ROI WMe CSFe -regress_apply_mot_types demean deriv \
-regress_motion_per_run -regress_censor_motion 0.25 \
-regress_censor_outliers 0.1 -blur_size 6.0 -regress_est_blur_epits \
-regress_est_blur_errts -html_review_style pythonic -execute
Thank you very much,
Angelika