AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 21, 2023 12:41AM
Hi AFNI team,

I was using 3dclustsim to estimate the probability of false positive (noise-only) clusters. I estimated the smoothness values using 3dFWHMx (-acf). I obtained -acf values of 0.5128 3.8451 11.3839 which I inputted to the 3dclustsim.

The issue I face is that every time I run 3dclustim , I get different cluster size. Sometimes the values had a difference of more than 10. I was wondering if there is any issues with the way I am running 3dclustsim.

I have attached the screenshot of the output (N2 bi-sided) for reference.

Code used:

3dClustSim \
-mask $temp_path/MNI152_T1_2mm_brain_GM_02182017.nii.gz \
-acf 0.5128 3.8451 11.3839 \
-nodec \
-pthr 0.001 \
-athr 0.05 \
-prefix 3dClustSimOutput_censor_MR_6mm_ACF.txt

AFNI version=AFNI_20.2.16

I have also tried running 3dclustsim on a different data set with different smoothness values and yet I find cluster size differing every time I run 3dclustsim .
Attachments:
open | download - Screenshot from 2023-02-20 18-07-29.png (35.3 KB)
open | download - Screenshot from 2023-02-20 18-22-59.png (35.6 KB)
Subject Author Posted

3dClustSim Attachments

Sahithyan February 21, 2023 12:41AM

Re: 3dClustSim Attachments

ptaylor February 21, 2023 09:15AM

Re: 3dClustSim

Sahithyan February 21, 2023 01:32PM

Re: 3dClustSim Attachments

ptaylor February 21, 2023 05:01PM

Re: 3dClustSim

Sahithyan February 22, 2023 12:41AM

Re: 3dClustSim

ptaylor February 22, 2023 06:03AM