Hi,

I have a methodological or computational question regarding the "-cenmode NTRP" function by 3dTproject that uses linear interpolation on censored sampling points.
This option is not yet implemented in AFNI proc.

Would it be ok to run AFNI proc with motion censoring, and, after AFNI proc finished, to go back to the "pb04...r01.blur+tlrc.HEAD" file in order to run -cenmode NTRP again as follows?

# 3dTproject
3dTproject \
-input pb04.${subject}_Rest.r01.blur+tlrc.HEAD \
-polort 0 \
-censor censor_${subject}_${session}_combined_2.1D \
-dsort Local_WMe_rall+tlrc \
-cenmode NTRP \
-ort X.nocensor.xmat.1D \
-prefix errts.${subject}_${session}_NTRP.anaticor

The output of this code would produce a new .errts file, but an .errts file with linear interpolation (NTRP mode). My question is simply if this way of running NTRP "afterwards" can lead to any non desired effects precisely because -cenmode NTRP is not directly implemented in the ongoing preprocessing stream by AFNI proc.



Edited 1 time(s). Last edit at 02/21/2023 10:26AM by Philipp.