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Sincerely, AFNI HQ

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lenaoflynn
March 01, 2023 02:53PM
Good afternoon,

I am having trouble running my 3dMVM script, likely due to a typo but I don't seem able to identify it. The error I get back says:

Error in `[.data.frame`(lop$dataStr, , jj) : undefined columns selected
Calls: process.MVM.opts -> [ -> [.data.frame

Attached is the script:

dMVM -prefix MVM_Group_Results -jobs 1 \
-bsVars 'group+Symptoms' \
-qVars 'Symptoms' \
-mask mask_resamp+tlrc. \
-SS_type 3 \
-num_glt 6 \
-gltLabel 1 Baseline_ETOH+vsETOH- -gltCode 1 'group : 1*Baseline_ETOH+ -1*Baseline_ETOH-' \
-gltLabel 2 Post_ETOH+vsETOH- -gltCode 2 'group : 1*Post_ETOH+ -1*Post_ETOH-' \
-gltLabel 3 Baseline_ETOH+vsHV -gltCode 3 'group : 1*Baseline_ETOH+ -1*HV' \
-gltLabel 4 Baseline_ETOH-vsHV -gltCode 4 'group : 1*Baseline_ETOH- -1*HV' \
-gltLabel 5 Post_ETOH+vsHV -gltCode 5 'group : 1*Post_ETOH+ -1*HV' \
-gltLabel 6 Post_ETOH-vsHV -gltCode 6 'group : 1*Post_ETOH+ -1*HV' \
-dataTable @Cfile-MVM.txt


Attached is dataTable:

Subj Group Severity InputFile
s102 Baseline_ETOH+ 1.03 /Volumes/19-1680/Lena_ETOH/Stat_files/1_Baseline/stats.s102+tlrc'[7]' \
s104 Baseline_ETOH+ 2.43 /Volumes/19-1680/Lena_ETOH/Stat_files/1_Baseline/stats.s104+tlrc'[7]' \
s105 Baseline_ETOH+ 1.13 /Volumes/19-1680/Lena_ETOH/Stat_files/1_Baseline/stats.s105+tlrc'[7]' \
...
s103 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s103+tlrc'[4]' \
s104 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s104+tlrc'[4]' \
s105 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s105+tlrc'[4]' \
s106 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s106+tlrc'[4]' \
s114 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s114+tlrc'[4]' \
s115 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s115+tlrc'[4]' \
s116 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s116+tlrc'[4]' \
s117 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s117+tlrc'[4]' \
s119 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s119+tlrc'[4]' \
s120 HV 0.00 /Volumes/19-1680/Lena_ETOH/Stat_files/HV/stats.s120+tlrc'[4]'

Thanks,
Lena
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Subject Author Posted

3dMVM

lenaoflynn March 01, 2023 02:53PM

Re: 3dMVM

ptaylor March 01, 2023 05:03PM

Re: 3dMVM

lenaoflynn March 01, 2023 05:22PM

Re: 3dMVM

rick reynolds March 01, 2023 05:54PM

Re: 3dMVM

gang March 02, 2023 08:40AM

Re: 3dMVM

lenaoflynn March 02, 2023 10:38AM