AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ebaldelo
March 02, 2023 01:40PM
1) This is the end of the output: 
++ update needed, installing...

++ downloading full package: curl -O -f macos_10.12_local.tgz ...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  975M  100  975M    0     0  16.6M      0  0:00:58  0:00:58 --:--:-- 17.5M
++ extracting package macos_10.12_local.tgz...
++ backing up current binaries to auto_backup.macos_10.12_local
deleting previous backup directory, auto_backup.macos_10.12_local ...
++ installing new binaries...
++ will source .cshrc from newly created /Users/ebaldelo/.tcshrc
++ adding /Users/ebaldelo/abin to PATH in /Users/ebaldelo/.zshrc ...
++ setting DYLD_LIBRARY_PATH in /Users/ebaldelo/.zshrc ...
-- seem be be sourcing .bashrc from /Users/ebaldelo/.bash_profile
++ setting DYLD_LIBRARY_PATH in /Users/ebaldelo/.profile ...
/Users/ebaldelo/.profile: Permission denied.

I went in and manually changed ownership via: 

>> sudo chown ebaldelo /Users/ebaldelo/.profile

this is what I got when I repeated: 

>> tcsh @update.afni.binaries -bindir ~/abin -package macos_10.12_local -defaults
-- running @update.afni.binaries version 3.21, July 22, 2022
-- have AFNI binaries under /Users/ebaldelo/abin
-- any downloads will be from [afni.nimh.nih.gov] via curl -O -f

-- attempting to install package macos_10.12_local under
   install dir: /Users/ebaldelo/abin...
-- have install dir
deleting old temporary directory...
++ working in new temp dir, .tmp.install
++ getting install prog: curl -O -f bin/misc/@update.afni.binaries ...
curl -O -f [afni.nimh.nih.gov]
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 50045  100 50045    0     0   202k      0 --:--:-- --:--:-- --:--:--  202k
-- fixing lost permissions on @update.afni.binaries
-- @update.afni.binaries is current, continuing with this version...
++ downloading test file: curl -O -f macos_10.12_local/afni ...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 11.7M  100 11.7M    0     0  12.9M      0 --:--:-- --:--:-- --:--:-- 12.9M
++ no update needed

2) 1d_tool.py now seems to work. And I am am able to (finally) attempt the original prompt. I attempted it on the same pre-registered data set I got the 1D file from. It looks pretty similar but there are a few places where the 3dvolreg data set looks different from the 3dAllineate data set. Is this to be expected?

Thank you VERY much for your time and help!
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Subject Author Posted

Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 01, 2023 06:26PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 01, 2023 07:30PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 09:47AM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 11:12AM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 12:00PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 12:14PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 12:25PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 12:34PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 12:44PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 12:55PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 01:00PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 01:08PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 01:40PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 02:38PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 03:00PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 04:44PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 05:19PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 05:37PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

ebaldelo March 02, 2023 06:06PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

rick reynolds March 02, 2023 06:32PM

Re: Translating 3dvolreg 1Dfile to 3dAllineate -1Dparam_apply

Daniel Glen March 13, 2023 10:36AM