AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 03, 2023 11:32AM
Dear AFNI experts,

I was wondering what the default var-cov structure is in 3dLME.

I’d like to specify an unstructured var-cov matrix for my analyses, and I think know how to do this, but just to be sure I’d like to run it by you. My model has the following variables: 1 GROUP variable, 3 within subject repeated measures (W1-3) and 1 covariate (COV):

-model “GROUP * W1 * W2 * W3 + COV” -qVars “COV”
-ranEff “~1”
-corStr “corSymm(form=~1|Subj)”\

Do you agree that this is the correct way of specifying my model with an unstructured cov-var matrix? And do I understand correctly that ranEff ~1 is being converted to ~1|Subj automatically by 3dLME?

Thanks for your help!

Best
Hans
Subject Author Posted

var-cov structure 3dLME

hansvanderhorn March 03, 2023 11:32AM

Re: var-cov structure 3dLME

gang March 04, 2023 09:45AM

Re: var-cov structure 3dLME

hansvanderhorn March 06, 2023 01:06PM

Re: var-cov structure 3dLME

hansvanderhorn March 07, 2023 03:52PM

Re: var-cov structure 3dLME

gang March 07, 2023 10:52PM

Re: var-cov structure 3dLME

hansvanderhorn March 07, 2023 11:48PM

Re: var-cov structure 3dLME

hansvanderhorn March 08, 2023 10:45AM

Re: var-cov structure 3dLME

gang March 08, 2023 02:51PM