Hi,
I am trying to perform proc.py command on output data from tedana (ts_OC.nii file).
I want to do only some blocks - mask scale regress.
The problem is that the input is already in +tlrc and the files from FreeSurfer are in +orig.
How can I overcome this issue?
Thank you!
Maya
Attached here my proc.py script:
3dcopy $resultsPath/tedana_r01/ts_OC.nii.gz $path/$subject.$session.$scan.OC
afni_proc.py \
-subj_id $subject.$session.$scan.OC \
-blocks mask scale regress \
-copy_anat anatSS.$subject.$session.$scan.ME.nii \
-anat_has_skull no \
-anat_follower anat_w_skull anat anatU.$subject.$session.$scan.ME.nii \
-anat_follower_ROI aaseg anat $path/Freesurfer/$subject/SUMA/aparc.a2009s+aseg.nii.gz \
-anat_follower_ROI aeseg epi $path/Freesurfer/$subject/SUMA/aparc.a2009s+aseg.nii.gz \
-anat_follower_ROI FSvent epi $path/Freesurfer/$subject/SUMA/fs_ap_latvent.nii.gz \
-anat_follower_ROI FSWe epi $path/Freesurfer/$subject/SUMA/fs_ap_wm.nii.gz \
-anat_follower_erode FSvent FSWe \
-dsets $subject.$session.$scan.OC+tlrc.HEAD \
-mask_epi_anat yes \
-mask_apply anat \
-regress_motion_per_run \
-regress_ROI_PC FSvent 3 \
-regress_ROI_PC_per_run FSvent \
-regress_make_corr_vols aeseg FSvent \
-regress_anaticor_fast \
-regress_anaticor_label FSWe \
-regress_apply_mot_types demean deriv \
-regress_est_blur_epits \
-regress_est_blur_errts \
-html_review_style pythonic
