AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 07, 2023 10:41AM
Hello AFNI experts,

I have 60s stimulation duration in a scan session. I plan to use two 30s block stim function (early stim func= BLOCK(30,1), late stim func= BLOCK(30,1)) option for the total 60s stimulation.

My question is for the early stim function BLOCK(30,1), does that consider the later 30s of stimulation as OFF (which is basically stimulation ON) and the same way for the later BLOCK function, does it consider the early 30s of stimulation as OFF?

#code:
3dDeconvolve \
-input $input \
-censor $censor \
-polort A \
-num_stimts 8 \
-stim_times 1 $stim_fileA 'BLOCK(30,1)' -stim_label 1 HEAT_Early \
-stim_times 2 $stim_fileB 'BLOCK(30,1)' -stim_label 2 HEAT_Late \
-stim_file 3 ${motion}'[0]' -stim_base 3 -stim_label 3 roll \
-stim_file 4 ${motion}'[1]' -stim_base 4 -stim_label 4 pitch \
-stim_file 5 ${motion}'[2]' -stim_base 5 -stim_label 5 yaw \
-stim_file 6 ${motion}'[3]' -stim_base 6 -stim_label 6 dS \
-stim_file 7 ${motion}'[4]' -stim_base 7 -stim_label 7 dL \
-stim_file 8 ${motion}'[5]' -stim_base 8 -stim_label 8 dP \
-tout -fout -rout \
-x1D ${prefix}.xmat.1D \
-x1D_uncensored ${prefix}.nocensor.xmat.1D \
-xjpeg ${prefix}_xmat.jpg \
-fitts ${prefix}_fitts.nii.gz \
-errts ${prefix}_errts.nii.gz \
-bucket ${prefix}_stats_epispace.nii.gz
Subject Author Posted

Mutiple stim functions in 3dDeconvolve program

Adury April 07, 2023 10:41AM

Re: Mutiple stim functions in 3dDeconvolve program

rick reynolds April 07, 2023 12:12PM

Re: Mutiple stim functions in 3dDeconvolve program

Adury April 07, 2023 01:38PM

Re: Mutiple stim functions in 3dDeconvolve program

Adury April 09, 2023 01:23PM

Re: Mutiple stim functions in 3dDeconvolve program

rick reynolds April 09, 2023 01:34PM