Hello,

I am doing HRF deconvolution using afni_proc.py, the process finished without error but I could not find the output specified by -ireps in the result folder. Could you please help me tackle this issue? Here is the afni_proc.py code

afni_proc.py -subj_id sub-ep0583s2 \
-out_dir /mnt/e/EP_EEGfMRI_deconvolution/sub-ep0583s2/Rsw_CSPLIN \
-blocks despike tshift align volreg mask blur \
scale regress \
-dsets /mnt/e/EP_EEGfMRI_deconvolution/sub-ep0583s2/func/sub-ep0583s2_task-spike_run-1_bold.nii.gz \
/mnt/e/EP_EEGfMRI_deconvolution/sub-ep0583s2/func/sub-ep0583s2_task-spike_run-2_bold.nii.gz \
/mnt/e/EP_EEGfMRI_deconvolution/sub-ep0583s2/func/sub-ep0583s2_task-spike_run-3_bold.nii.gz \
-tcat_remove_first_trs 6 \
-radial_correlate_blocks tcat volreg \
-copy_anat /mnt/e/EP_EEGfMRI_deconvolution/derivatives/afni/sub-ep0583s2/anat/anatSS.sub-ep0583s2.nii \
-anat_has_skull no \
-anat_follower anat_w_skull anat /mnt/e/EP_EEGfMRI_deconvolution/sub-ep0583s2/anat/sub-ep0583s2_T1w.nii.gz \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_warp_dxyz 3.5 \
-align_opts_aea -check_flip -cost lpc+ZZ -giant_move -AddEdge \
-align_unifize_epi local \
-mask_epi_anat yes \
-blur_in_mask yes \
-blur_size 6.5 \
-blur_to_fwhm \
-regress_stim_times /mnt/e/EP_EEGfMRI_deconvolution/derivatives/afni/sub-ep0583s2/events/sub-ep0583s2_spike_Rsw_events.1D \
-regress_stim_labels Rsw \
-regress_stim_times_offset -11.4 \
-regress_basis 'CSPLIN(-3.8,20.9,14)' \
-regress_stim_types times \
-regress_local_times \
-regress_motion_per_run \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.05 \
-regress_compute_fitts \
-regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits \
-regress_est_blur_errts \
-regress_run_clustsim yes \
-regress_reml_exec \
-regress_opts_reml -GOFORIT 99 \
-regress_opts_3dD \
-bout \
-jobs 16 \
-allzero_OK \
-GOFORIT 99 \
-regress_3dD_stop \
-html_review_style pythonic

And here is the 3dDconvole section in the whole AFNI process coded generated by afni_proc.py. There is a line -iresp 1 iresp_Rsw.$subj. Please also find the whole process file here [drive.google.com]

3dDeconvolve -input pb05.$subj.r*.scale+orig.HEAD \
-censor censor_${subj}_combined_2.1D \
-ortvec mot_demean.r01.1D mot_demean_r01 \
-ortvec mot_demean.r02.1D mot_demean_r02 \
-ortvec mot_demean.r03.1D mot_demean_r03 \
-polort 3 \
-local_times \
-num_stimts 1 \
-stim_times 1 stimuli/offset_sub-ep0583s2_spike_Rsw_events.1D \
'CSPLIN(-3.8,20.9,14)' \
-stim_label 1 Rsw \
-iresp 1 iresp_Rsw.$subj \
-bout \
-jobs 16 \
-allzero_OK \
-GOFORIT 99 \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-x1D_uncensored X.nocensor.xmat.1D \
-errts errts.${subj} \
-x1D_stop \
-bucket stats.$subj

Thanks,
Zhengchen