Hello,
I am new to AFNI and am having some trouble running a script. We have made this script (DWI_do_01_QC.sh) to look at sagittal images all together for easier visual analysis of motion and striations on any individual slice to then aggregate and exclude. My colleague has run this script and it is working well on his machine, but I am receiving a "fatal signal 10" error message.
Below is what I am getting when I attempt to run the script with p187's postop data.
Thank you!
Kayla Togneri
NINDS
(base) ndsl-imab-2469:dwi-proc tognerikm$ ./DWI_do_01_QC.sh -p p187
Precompiled binary macos_10.12_local: Apr 7 2023 (Version AFNI_23.1.00 'Publius Helvius Pertinax')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to LR Frank for "quick" questions
Initializing: X11
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++ If you are using XQuartz 2.7.10 (or later), and AFNI crashes when
+ opening windows, or you cannot type text into AFNI popup windows,
+ you might need to set an environment variable to solve this problem:
+ setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace # tcsh
+ export DYLD_LIBRARY_PATH=/opt/X11/lib/flat_namespace # bash
+ This command is best put in your startup ~/.cshrc file, so that
+ it will be invoked for every (t)csh shell you open (mutatis mutandis
+ for the bash shell, of course).
+
+ If things are OK and you want to avoid having this warning message
+ pollute your terminal, use this:
+ setenv AFNI_SKIP_DYLD_WARNING YES # tcsh
+ export AFNI_SKIP_DYLD_WARNING=YES # bash
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
[The X.Org Foundation v 12101006].Warning: Widget must be a VendorShell.
Fatal Signal 10 (SIGBUS) received
open_MCW_imseq
SPLASH_popup_image
AFNI_splashup
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_23.1.00 Compile date = Apr 7 2023
** [[Precompiled binary macos_10.12_local: Apr 7 2023]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/tognerikm/.afni.crashlog
++ AFNI is detached from terminal.
^C