AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
May 02, 2023 04:15PM
Hello,

I am new to AFNI and am having some trouble running a script. We have made this script (DWI_do_01_QC.sh) to look at sagittal images all together for easier visual analysis of motion and striations on any individual slice to then aggregate and exclude. My colleague has run this script and it is working well on his machine, but I am receiving a "fatal signal 10" error message.

Below is what I am getting when I attempt to run the script with p187's postop data.

Thank you!
Kayla Togneri
NINDS


(base) ndsl-imab-2469:dwi-proc tognerikm$ ./DWI_do_01_QC.sh -p p187
Precompiled binary macos_10.12_local: Apr 7 2023 (Version AFNI_23.1.00 'Publius Helvius Pertinax')


** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to LR Frank for "quick" questions

Initializing: X11
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
++ If you are using XQuartz 2.7.10 (or later), and AFNI crashes when
+ opening windows, or you cannot type text into AFNI popup windows,
+ you might need to set an environment variable to solve this problem:
+ setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace # tcsh
+ export DYLD_LIBRARY_PATH=/opt/X11/lib/flat_namespace # bash
+ This command is best put in your startup ~/.cshrc file, so that
+ it will be invoked for every (t)csh shell you open (mutatis mutandis
+ for the bash shell, of course).
+
+ If things are OK and you want to avoid having this warning message
+ pollute your terminal, use this:
+ setenv AFNI_SKIP_DYLD_WARNING YES # tcsh
+ export AFNI_SKIP_DYLD_WARNING=YES # bash

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
[The X.Org Foundation v 12101006].Warning: Widget must be a VendorShell.

Fatal Signal 10 (SIGBUS) received
open_MCW_imseq
SPLASH_popup_image
AFNI_splashup
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_23.1.00 Compile date = Apr 7 2023
** [[Precompiled binary macos_10.12_local: Apr 7 2023]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/tognerikm/.afni.crashlog
++ AFNI is detached from terminal.
^C
Subject Author Posted

Fatal signal 10

tognerikm May 02, 2023 04:15PM

Re: Fatal signal 10

ptaylor May 02, 2023 04:58PM

Re: Fatal signal 10

tognerikm May 03, 2023 09:12AM

Re: Fatal signal 10

rick reynolds May 03, 2023 10:26AM

Re: Fatal signal 10

tognerikm May 03, 2023 11:49AM

Re: Fatal signal 10

rick reynolds May 03, 2023 12:34PM

Re: Fatal signal 10

tognerikm May 03, 2023 01:11PM

Re: Fatal signal 10

rick reynolds May 03, 2023 04:49PM

Re: Fatal signal 10

tognerikm May 03, 2023 05:34PM

Re: Fatal signal 10

rick reynolds May 03, 2023 05:43PM

Re: Fatal signal 10

tognerikm May 04, 2023 11:14AM

Re: Fatal signal 10

rick reynolds May 04, 2023 03:41PM