We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
First, scalp the AFNI anatomical dataset with bet (after converting into analyze)
/usr/fsl/bin/bet MPrage.hdr EMc_scalp
Next, Put into to3d using original (unscalped) tlrc MPrage anatomy as the geometry parent:
to3d -geomparent MPrage+tlrc -prefix EMc_scalp_final2 -type anat -view tlrc EMc_scalp.hdr