AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 08, 2003 01:35PM
Lukas,

Try the following;

First, scalp the AFNI anatomical dataset with bet (after converting into analyze)
/usr/fsl/bin/bet MPrage.hdr EMc_scalp

Next, Put into to3d using original (unscalped) tlrc MPrage anatomy as the geometry parent:
to3d -geomparent MPrage+tlrc -prefix EMc_scalp_final2 -type anat -view tlrc EMc_scalp.hdr

That has worked for us.

Tim Souza
Subject Author Posted

brain extraction

Lukas Pezawas January 07, 2003 07:27PM

Re: brain extraction

Tim Souza January 08, 2003 01:35PM

Thanks

Lukas Pezawas January 08, 2003 05:13PM

Re: brain extraction

Matthew Belmonte May 12, 2003 12:07PM