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January 16, 2003 07:03PM
Hi AFNI experts!

I wonder, if anyone out there knows an easy solution for my little problem:

I have an extracted brain in BRIK format, which has already been nudged with 3dAnatnudge and finally has been perfectly nudged with the nudge plug-in of AFNI.
Next I would like to move this brain in TT-space.
However, I would feel better, if I could go through the whole TT-procedure with the unscalped BRIK image, because sometimes I am missing a little bit of grey matter at the edges and marking the most left/right/superior point etc and therefore it would be more accurate doing this on the unscalped brain.

I think, I have to re-apply the rotations and translations done to the extracted brain to the unscalped image. After I put the unscalped brain into TT-space, I could warp the coordinates to the nudged brain.
But HOW should I script that?

Any suggestions and comments are warmly wellcome!

Thanks,


Lukas
Subject Author Posted

rotations & translations

Lukas Pezawas January 16, 2003 07:03PM

Re: rotations & translations

Ziad January 17, 2003 10:10AM

Re: rotations & translations

Lukas Pezawas January 17, 2003 12:26PM

Re: rotations & translations

Ziad January 17, 2003 12:58PM

Thanks!

Lukas Pezawas January 17, 2003 01:06PM



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