Hello again,
First I'd like to say thanks to Bob cox for the help with a read out of voxel activations. 3dmaskdump along with 3dcalc worked great. Second I have an additional question concerning the to3d command with the -xFOV -yFOV and -zSLAB.
I am currently working on my first project through afni, but the project was an inherited dataset. Not only did the dataset become mine, but it was used to teach me a little about the AFNI package. Well, somewhere along the line the individual using afni before me forget to teach me about offsetting the first slice because he didn't know about it himself. Anyway, I went ahead an analyzed all my data but recently found out about the need to specify the x, y, and z origins because it isn't included in the raw data files that come from the scanner. So, my question is, what do I do from here? Do I have to start over completely, this time specifying the x, y, z origins through the to3d GUI or the command line, or can I just use 3dNudge on the data that is already analyzed? If I do have to start over, is it only the z-origin that I have to specify (my understanding is that the x, and y were probably centered in the scanner.
As far as additional information you may want or need