AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 10, 2003 03:29PM
Hi Mimi,
The outlier file is not a graph of motion, although it can be useful in identifying timepoints with excessive motion. It is a measure of the number of voxels containing an outlier value at each successive timepoint. A timepoint can become an outlier because of motion, a scanner malfunction, or anything else that affects a large number of voxels at a small number of timepoints.
Go to Latest AFNI News [afni.nimh.nih.gov]
and scroll down to August 16, 2001 for a more thorough description. Also helpful is the documentation to 3dToutcount [afni.nimh.nih.gov]
The other graph that you mention is the output of 3dvolreg. This output gives six parameters that specify how each successive image is rotated and translated in order to make it line up with the designated base image. Sources of information about this are:
[afni.nimh.nih.gov] [afni.nimh.nih.gov]
I'm not in a position to say what constitutes excessive motion - I hope you'll hear from others about that. In part, it has to do with how badly you need that particular set of data, and how successfully you're able to separate the motion artifact from the true signal in the analysis.
Hope this helps.
Sally
Subject Author Posted

about excessive motion

mimi February 10, 2003 03:05PM

Re: about excessive motion

sally durgerian February 10, 2003 03:29PM