I have added the following resampling option to both 3drotate and the Nudge Dataset plugin: "-Fourier_nopad". This lets you shift the image using the FFT method and keep the wraparound effect. You should be able to use this special case to fix your images. In your particular case, something like this should help:
3drotate -ashift -20A 0 0 -Fourier_nopad -prefix AA_fixed AA+orig
I'm just guessing that 20mm shift in the anterior direction should work -- you'll have to experiment, or something.
This change is now in the AFNI source code and the linux_glibc22 binaries.
bob cox