AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Lydia
October 28, 2003 03:14PM
Thanks for the explanation.

So now the steps would be:
1. Normalization by the maximum intensity in an angio dataset:
$ 3dcalc -a Angio+orig -expr 'a/max_intensity_Angio' -fscale -prefix Angio_norm

2. Resampling the angio dataset to lower resolution:
$ 3dfractionize -template func+orig -input Angio_norm+orig -prefix Angio_frac -preserve

It seems to me that 3dfractionize here (without -clip and -wrap options) is doing almost the same thing as 3dresample if I use the command below
$ 3dresample -master func+orig -rmode Li -prefix Angio_resamp -inset Angio_norm+orig
So what's the difference on the usage?

3. Detect the blood vessels in the angio dataset
$ 3dmerge -1noneg -1clip 0.2 -dxyz=1 -1clust 1.01 8 -prefix Angio_vas Angio_frac+orig

Advice and comments will be greatly appreciated.

Lydia

Subject Author Posted

How to make a mask for large blood vessels from angio dataset?

Lydia October 27, 2003 05:10PM

Re: How to make a mask for large blood vessels from angio dataset?

bob cox October 28, 2003 08:48AM

Re: How to make a mask for large blood vessels from angio dataset?

Ziad S. Saad October 28, 2003 09:52AM

Re: How to make a mask for large blood vessels from angio dataset?

Lydia October 28, 2003 03:14PM

Re: How to make a mask for large blood vessels from angio dataset?

rick reynolds October 29, 2003 11:09AM