AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 27, 2004 05:01PM
Such an option with 3dDeconvolve has been discussed for a while, and we are now working on implementing it into AFNI.

However, if you have access to Matlab, here is a workaround solution to the option of gamma variate and its time derivative with 3dDeconvolve:

(1) Create a directory (e.g., matscript), and get the package at the following location to the new directory you just created:

[afni.nimh.nih.gov]

(2) Unpack the tarred file with the following command:

tar xvzf afni_matlab.tgz

(3) Set the matlab path appropriately. For csh or tcsh users, add the directory to the MATLABPATH environment variable. If you don't know to do this, ask somebody such as your system administrator for help.

(4) Go to the directory where you want to run regression analysis of some dataset, start Matlab and type "Decon" at the prompt. You will be asked a bunch of streamlined and interactive questions, which would lead you to running 3dDeconvolve with various options including basis functions of gamma variate and its derivative.

Let me know if it works for you.

Gang
Subject Author Posted

3dDeconvolve with a temporal derivative

Avram Holmes January 27, 2004 04:15PM

Re: 3dDeconvolve with a temporal derivative

Gang Chen January 27, 2004 04:21PM

Re: 3dDeconvolve with a temporal derivative

Avram Holmes January 27, 2004 04:36PM

Re: 3dDeconvolve with a temporal derivative

Gang Chen January 27, 2004 05:01PM