AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

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Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 30, 2004 11:13AM
Hi all

I came across a puzzling behavior of 3dclust. When I run the following:

3dclust -1thresh 3.30 wo.irf.t.thr_0.001_2 \
4.3 54 'stats.irf+orig[1]' > wo_irf_clust.txt

it says:
++ Writing dataset ./wo.irf.t.thr_0.001_2+orig.HEAD

but the above output dataset is nowhere to be found! (although the text file with the cluster table is correctly written)


Identical results if I specify 1dindex and 1tindex:

3dclust -1thresh 3.30 -1dindex 0 -1tindex 0 -prefix wo.irf.t.thr_0.001_2 \
4.3 54 'stats.irf+orig[1]' > wo_irf_clust.txt


On the other hand, if I don't include the subbrick specification in the input dataset, but indicate it in 1dindex and 1tindex, as in:

3dclust -1thresh 3.30 -1dindex 1 -1tindex 1 -prefix wo.irf.t.thr_0.001_2 \
4.3 54 stats.irf+orig[1] > wo_irf_clust.txt

I do get a dataset, but instead of a single-brik dataset I get a bucket dataset with the same number of subbricks as the input dataset, even though in the help of 3dmerge, with regard to the -1dindex and -1tindex options, is stated:

"With these, you can operate on any given sub-brick of the inputs dataset(s) to produce *** as output a 1 brick dataset. ***" (asterisks added).


any comments or suggestions?

thanks!

giuseppe
Subject Author Posted

3dclust ghost output...

Giuseppe Pagnoni January 30, 2004 11:13AM

3dclust ghost output... (typo)

Giuseppe Pagnoni January 30, 2004 12:52PM

Re: 3dclust ghost output... (typo)

Wolfgang Gaggl February 03, 2004 03:53PM